Browse Element(s) Details


Os.5364.1.S1_at

Description gb:AK068660.1
DB_XREF= gi:32978677
TID=Os.5364.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5364 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013162K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162K14, full insert sequence.
FL= gb:AK068660.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5816011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58110Os.26543.1.S1_at11/113+33022788..33024486Leucine Rich Repeat family protein, expressed
LOC_Os03g58120OsAffx.13537.1.S1_at11/113+33030388..33034068expressed protein
LOC_Os03g58130Os.9070.1.S1_at5/113+33035110..33038349Thioredoxin-like protein 1, putative, expressed
LOC_Os03g58140Os.49698.1.S1_at9/113+33037934..33040418Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.7667.1.S1_x_at11/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.9959.1.S1_at10/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58160Os.5364.1.S1_at11/113+33044774..33047981HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g58170Os.54750.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.2.S1_x_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5364.1.S1_at--286--2331Chr03:33047435..33047459 (25 bp)
AAAGTTCATCTGTTGAGGCCAATGG
LOC_Os03g58160
Os.5364.1.S1_at--308--6291Chr03:33047476..33047500 (25 bp)
GATGTTGCTTCCAGTAGCTCTGAAC
LOC_Os03g58160
Os.5364.1.S1_at--257--1011Chr03:33047537..33047561 (25 bp)
AGGATTTCTGGGAGGACCTGCTGCA
LOC_Os03g58160
Os.5364.1.S1_at--39--6311Chr03:33047575..33047599 (25 bp)
GATGAGGATACCAGGAACCCCGCTA
LOC_Os03g58160
Os.5364.1.S1_at--347--8171Chr03:33047588..33047612 (25 bp)
GGAACCCCGCTATAGATGATATGAA
LOC_Os03g58160
Os.5364.1.S1_at--575--1311Chr03:33047627..33047651 (25 bp)
AGATGGGCTACCTCAACTCAAGCAG
LOC_Os03g58160
Os.5364.1.S1_at--105--6952Chr04:5656180..5656632 (25 bp)
GTAGTAGCTCTGGTCTGATCTTGCT
NONE
Os.5364.1.S1_at--327--9191Chr03:33047697..33047721 (25 bp)
TCCAACGACCCTTGAGTACTTGTTA
LOC_Os03g58160
Os.5364.1.S1_at--667--4931Chr03:33047727..33047751 (25 bp)
GCTTGTCATTATACTTATCCGCTTT
LOC_Os03g58160
Os.5364.1.S1_at--1109--351Chr03:33047759..33047783 (25 bp)
ATCAATTTGAGTAGGTCTCCTCCCC
LOC_Os03g58160
Os.5364.1.S1_at--809--1611Chr03:33047810..33047834 (25 bp)
AGCTGTACATACTATTGCCGCAATA
LOC_Os03g58160
Target Sequence 
AAAGTTCATCTGTTGAGGCCAATGGAGGCNAAGGCGCAACAAGATGTTGCTTCCAGTAGCTCTGAACACGGGAAAATCAA
GCCATCTAACGGAGAGTTAAATGAGGATTTCTGGGAGGACCTGCTGCACGAGGGTGGGCTCGATGAGGATACCAGGAACC
CCGCTATAGATGATATGAACTTGCTGTCTCAAAAGATGGGCTACCTCAACTCAAGCAGCACCAAATCGNCACAGTAGTAG
CTCTGGTCTGATCTTGCTGCAGCTCCAACGACCCTTGAGTACTTGTTAATCAAGCTTGTCATTATACTTATCCGCTTTGA
GGATGATCAATTTGAGTAGGTCTCCTCCCCCATGGTGATGATCTTATGGTAGCATCAGCTGTACATACTATTGCCGCAAT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis