Browse Element(s) Details


Os.49698.1.S1_at

Description gb:AK107547.1
DB_XREF= gi:32992756
TID=Os.49698.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49698 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-A05, full insert sequence.
FL= gb:AK107547.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g581409/11Uncharacterized protein family UPF0005 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58090Os.11704.1.S1_at11/113+33010651..33013508expressed protein
LOC_Os03g58100Os.7346.1.S1_at11/113+33017731..33019745pentatricopeptide, putative, expressed
LOC_Os03g58110Os.26543.1.S1_at11/113+33022788..33024486Leucine Rich Repeat family protein, expressed
LOC_Os03g58120OsAffx.13537.1.S1_at11/113+33030388..33034068expressed protein
LOC_Os03g58130Os.9070.1.S1_at5/113+33035110..33038349Thioredoxin-like protein 1, putative, expressed
LOC_Os03g58140Os.49698.1.S1_at9/113+33037934..33040418Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.7667.1.S1_x_at11/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.9959.1.S1_at10/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58160Os.5364.1.S1_at11/113+33044774..33047981HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g58170Os.54750.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.2.S1_x_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016595molecular_functionglutamate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49698.1.S1_at--109--9571Chr03:33039642..33039666 (25 bp)
TCTTCACCGTCTGTATTAGCTTCTC
LOC_Os03g58140
Os.49698.1.S1_at--569--3891NONE
CTGGGTTGCCTCTCCAAGAATGGGA
NONE
Os.49698.1.S1_at--21--3471Chr03:33039475..33039499 (25 bp)
CAGTGATATTTCAGGCGGCGGGAAT
LOC_Os03g58140
Os.49698.1.S1_at--38--6511Chr03:33039441..33039465 (25 bp)
GATAGTGATCGGACTGACCTGCTAC
LOC_Os03g58140
Os.49698.1.S1_at--381--1351Chr03:33039400..33039424 (25 bp)
AGAGAGGCTACGACTTCGAGTTCCT
LOC_Os03g58140
Os.49698.1.S1_at--361--9751NONE
TAATCACGATCTTTTTGCCGATGGG
NONE
Os.49698.1.S1_at--1102--4131Chr03:33038626..33038650 (25 bp)
CGCTGATCTTCTCCGGGTTCATTAT
LOC_Os03g58140
Os.49698.1.S1_at--5--6751Chr03:33038610..33038634 (25 bp)
GTTCATTATCTACGACACCGACAAC
LOC_Os03g58140
Os.49698.1.S1_at--661--9231Chr03:33038491..33038515 (25 bp)
TCCAGGCCGCCGATGGGTAGTAGAA
LOC_Os03g58140
Os.49698.1.S1_at--555--2831Chr03:33038465..33038489 (25 bp)
AAGTTTGCCAACCACATTGGGCTGC
LOC_Os03g58140
Os.49698.1.S1_at--450--2511Chr03:33038361..33038385 (25 bp)
AACTCCTTTGTGATTGGGCATTAAC
LOC_Os03g58140
Target Sequence 
TCTTCACCGTCTGTATTAGCTTCTCCGTCGGCCTGGGTTGCCTCTCCAAGAATGGGACAGTGATATTTCAGGCGGCGGGA
ATGACGGCGGCGATAGTGATCGGACTGACCTGCTACACGTTCTGGGCCGCCAAGAGAGGCTACGACTTCGAGTTCCTCGG
CCCATTCCTCTTCGCTGCCACGCTCGTCCTCTTCCTCTACGCCATAATCACGATCTTTTTGCCGATGGGGAGAACGGGGA
AGTTGGTGTACGGGTGCGTGGCGGCGCTGATCTTCTCCGGGTTCATTATCTACGACACCGACAACCTCATCAAGCGATAC
ACCTACGACGAGTACGTGACCGCCGCCATCACGCTCTACCTCGACATCATCAACCTCTTCATGGCCCTCGTCACGGCGCT
CCAGGCCGCCGATGGGTAGTAGAACAAGTTTGCCAACCACATTGGGCTGCAGGATGAAGCTGGATCGAAATGTGATTTCT
AGTACTTTTTTTTAAACACAAGACAGTGTATGTAAAGATAGGGTTAAACAACTCCTTTGTGATTGGGCATTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis