Browse Element(s) Details


OsAffx.13537.1.S1_at

Description tigr:9631.m05712
TID=OsAffx.13537.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5812011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58080Os.11858.1.S1_at11/113+33004350..33009554folate/biopterin transporter family protein, expressed
LOC_Os03g58090Os.11704.1.S1_at11/113+33010651..33013508expressed protein
LOC_Os03g58100Os.7346.1.S1_at11/113+33017731..33019745pentatricopeptide, putative, expressed
LOC_Os03g58110Os.26543.1.S1_at11/113+33022788..33024486Leucine Rich Repeat family protein, expressed
LOC_Os03g58120OsAffx.13537.1.S1_at11/113+33030388..33034068expressed protein
LOC_Os03g58130Os.9070.1.S1_at5/113+33035110..33038349Thioredoxin-like protein 1, putative, expressed
LOC_Os03g58140Os.49698.1.S1_at9/113+33037934..33040418Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.7667.1.S1_x_at11/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.9959.1.S1_at10/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58160Os.5364.1.S1_at11/113+33044774..33047981HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g58170Os.54750.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.2.S1_x_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13537.1.S1_at--681--4231Chr03:33032055..33032079 (25 bp)
CCGAGCGCTACTCCATTTGAAGAAG
LOC_Os03g58120
OsAffx.13537.1.S1_at--809--6771Chr03:33032091..33032115 (25 bp)
GTTACTTCTCTTTGCACATATGTTG
LOC_Os03g58120
OsAffx.13537.1.S1_at--440--10191Chr03:33032154..33032178 (25 bp)
TATTTTGCGTTATTTCCTTACCAAG
LOC_Os03g58120
OsAffx.13537.1.S1_at--575--6211Chr03:33032191..33032215 (25 bp)
GAGGCTGCTATCTTGTTCAACAGAA
LOC_Os03g58120
OsAffx.13537.1.S1_at--815--7871Chr03:33032227..33032251 (25 bp)
GGTTTTGTTCCTGACCAAGAGACAT
LOC_Os03g58120
OsAffx.13537.1.S1_at--722--4871Chr03:33032256..33032280 (25 bp)
GCTATTAGTCCCTGAGATGGCTCTT
LOC_Os03g58120
OsAffx.13537.1.S1_at--70--8332Chr05:36610..36629 (20 bp)
GGCTCTTTCTTCTTTACTTAATATG
NONE
OsAffx.13537.1.S1_at--223--6251Chr03:33032438..33032462 (25 bp)
GATGGGTACCTGATTCAAGGACACA
LOC_Os03g58120
OsAffx.13537.1.S1_at--70--8151Chr03:33032456..33032480 (25 bp)
GGACACATAGTATCTTGCTCAGCAG
LOC_Os03g58120
OsAffx.13537.1.S1_at--1112--3191Chr03:33033965..33033989 (25 bp)
CAAGGTTAATGCTCCGTCTTTACCG
LOC_Os03g58120
OsAffx.13537.1.S1_at--487--6091Chr03:33033996..33034020 (25 bp)
GAGTCCCAACGGATTGCAAGGCCTA
LOC_Os03g58120
Target Sequence 
CCGAGCGCTACTCCATTTGAAGAAGGAGAAGGATGTGTTACTTCTCTTTGCACATATGTTGATGGAAGGCTGTCTATTGA
ATGAGTATACATACAACTGTATTTTGCGTTATTTCCTTACCAAGGAAACGATTTTTGAGGCTGCTATCTTGTTCAACAGA
ATGGTGAAGGATGGTTTTGTTCCTGACCAAGAGACATTTGAGCTATTAGTCCCTGAGATGGCTCTTTCTTCTTTACTTAA
TATGATTTCAGAAAGTTTGCTAACAGTTGTAAATATGGATGGAATGATGAGTCCCAGAATATCTAACATTATTATTTATG
GCCTTATTAAAGAGGGCTTCAAGAGTGAAGCATGTAAGTTTCTTGATCAAATGATAGAGAAGGGATGGGTACCTGATTCA
AGGACACATAGTATCTTGCTCAGCAGTAGTGGTCGAGAGGAGCCTAGAGAAAGTGATGAAGTCAACCACACAGTGGATGA
TGACAATATGGCTGATTCAAGGTTAATGCTCCGTCTTTACCGTTTCTGGAGTCCCAACGGATTGCAAGGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis