Browse Element(s) Details


Os.7346.1.S1_at

Description gb:AK120623.1
DB_XREF= gi:37990246
TID=Os.7346.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152L18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152L18, full insert sequence.
FL= gb:AK120623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5810011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58060Os.19368.1.S1_at11/113+32988357..329993555'-3' exoribonuclease, putative, expressed
LOC_Os03g58070Os.14883.1.S1_a_at11/113+33000291..33003846hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g58080Os.11858.1.S1_at11/113+33004350..33009554folate/biopterin transporter family protein, expressed
LOC_Os03g58090Os.11704.1.S1_at11/113+33010651..33013508expressed protein
LOC_Os03g58100Os.7346.1.S1_at11/113+33017731..33019745pentatricopeptide, putative, expressed
LOC_Os03g58110Os.26543.1.S1_at11/113+33022788..33024486Leucine Rich Repeat family protein, expressed
LOC_Os03g58120OsAffx.13537.1.S1_at11/113+33030388..33034068expressed protein
LOC_Os03g58130Os.9070.1.S1_at5/113+33035110..33038349Thioredoxin-like protein 1, putative, expressed
LOC_Os03g58140Os.49698.1.S1_at9/113+33037934..33040418Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.7667.1.S1_x_at11/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.9959.1.S1_at10/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7346.1.S1_at--133--831Chr03:33019217..33019241 (25 bp)
ATGGTTCATGAGTTCTTCGCAGGAG
LOC_Os03g58100
Os.7346.1.S1_at--638--10391Chr03:33019308..33019332 (25 bp)
TTGTCGGTTATGTCCCTAATACTTC
LOC_Os03g58100
Os.7346.1.S1_at--919--3911Chr03:33019400..33019424 (25 bp)
CTGGCAATCTCTTTTGGGCTTCTAA
LOC_Os03g58100
Os.7346.1.S1_at--920--7571Chr03:33019415..33019439 (25 bp)
GGGCTTCTAAATACAGCACCGGGAA
LOC_Os03g58100
Os.7346.1.S1_at--879--7471Chr03:33019467..33019491 (25 bp)
GTGTGTGTCCAGATTGCCATTCGAT
LOC_Os03g58100
Os.7346.1.S1_at--1149--8491Chr03:33019491..33019515 (25 bp)
TGGCAAAGCTTGTTTCTATGGTCTT
LOC_Os03g58100
Os.7346.1.S1_at--367--3751Chr03:33019532..33019556 (25 bp)
CTCAGAGACCTAAATCGTTTCCACC
LOC_Os03g58100
Os.7346.1.S1_at--140--7711Chr03:33019569..33019593 (25 bp)
GGGTCTGCTCTTGTGGTGACTACTG
LOC_Os03g58100
Os.7346.1.S1_at--313--6971Chr03:33019618..33019642 (25 bp)
GTACCAAAATACCTTATCCTTCCAG
LOC_Os03g58100
Os.7346.1.S1_at--341--2191Chr03:33019645..33019669 (25 bp)
ACACAAAGGCTTTATCCATTCAGGT
LOC_Os03g58100
Os.7346.1.S1_at--1112--6551Chr03:33019672..33019696 (25 bp)
GATTAACTTGTACACCCATGAGAAA
LOC_Os03g58100
Target Sequence 
ATGGTTCATGAGTTCTTCGCAGGAGATGGAAGTCACCCACACTCACAGGAGGCACGCAGAATGGTTGATGAAGTTATTGA
GCAGCTAAAACTTGTCGGTTATGTCCCTAATACTTCACATGTGTTTCATGTTGAAATGGGTGAGGAGGAGAAAGCANCAA
GCCTAAGATACCATAGTGAGAAGCTGGCAATCTCTTTTGGGCTTCTAAATACAGCACCGGGAACTACCCTTCGTATTGTT
AAGAATCTTCGTGTGTGTCCAGATTGCCATTCGATGGCAAAGCTTGTTTCTATGGTCTTTAACANGGCGAATCATACTCA
GAGACCTAAATCGTTTCCACCNACTTTGAAGATGGGGTCTGCTCTTGTGGTGACTACTGGTAGAGTTTAGGAACATAACT
GCTGTACCAAAATACCTTATCCTTCCAGTAACACAAAGGCTTTATCCATTCAGGTATGATTAACTTGTACACCCATGAGA
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis