Browse Element(s) Details


Os.9070.1.S1_at

Description gb:AK101877.1
DB_XREF= gi:32987086
TID=Os.9070.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9070 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070H24, full insert sequence.
FL= gb:AK101877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g581305/11Thioredoxin-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58090Os.11704.1.S1_at11/113+33010651..33013508expressed protein
LOC_Os03g58100Os.7346.1.S1_at11/113+33017731..33019745pentatricopeptide, putative, expressed
LOC_Os03g58110Os.26543.1.S1_at11/113+33022788..33024486Leucine Rich Repeat family protein, expressed
LOC_Os03g58120OsAffx.13537.1.S1_at11/113+33030388..33034068expressed protein
LOC_Os03g58130Os.9070.1.S1_at5/113+33035110..33038349Thioredoxin-like protein 1, putative, expressed
LOC_Os03g58140Os.49698.1.S1_at9/113+33037934..33040418Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.7667.1.S1_x_at11/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58150Os.9959.1.S1_at10/113+33041956..33044330Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os03g58160Os.5364.1.S1_at11/113+33044774..33047981HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g58170Os.54750.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.2.S1_x_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9070.1.S1_at--850--7731Chr03:33038189..33038213 (25 bp)
GGTGGTACTTGTTAGATCGATCGAT
LOC_Os03g58130
Os.9070.1.S1_at--915--10011Chr03:33038242..33038266 (25 bp)
TAGCTTGTGTTTGTTTGCCTGTCTT
LOC_Os03g58130
Os.9070.1.S1_at--713--4471Chr03:33038258..33038282 (25 bp)
GCCTGTCTTAGTTAACTGGGAACCA
LOC_Os03g58130
Os.9070.1.S1_at--858--4371Chr03:33038280..33038304 (25 bp)
CCAAACTTGTGGTCATTCGGTCAAT
LOC_Os03g58130
Os.9070.1.S1_at--228--111Chr03:33038294..33038318 (25 bp)
ATTCGGTCAATTTGCTATGTCATGA
LOC_Os03g58130
Os.9070.1.S1_at--103--3011Chr03:33038350..33038374 (25 bp)
AATGCTTGCTTGTTAATGCCCAATC
NONE
Os.9070.1.S1_at--409--9811Chr03:33038389..33038413 (25 bp)
TAACCCTATCTTTACATACACTGTC
NONE
Os.9070.1.S1_at--722--3071Chr03:33038438..33038462 (25 bp)
AATCACATTTCGATCCAGCTTCATC
NONE
Os.9070.1.S1_at--924--551Chr03:33038460..33038484 (25 bp)
ATCCTGCAGCCCAATGTGGTTGGCA
NONE
Os.9070.1.S1_at--46--8511Chr03:33038480..33038504 (25 bp)
TGGCAAACTTGTTCTACTACCCATC
NONE
Os.9070.1.S1_at--538--7411Chr03:33038617..33038641 (25 bp)
GTGTCGTAGATAATGAACCCGGAGA
NONE
Target Sequence 
GGTGGTACTTGTTAGATCGATCGATCTGCNTCACAGCAACTGTNGCATATGTTTAGCTTGTGTTTGTTTGCCTGTCTTAG
TTAACTGGGAACCAAACTTGTGGTCATTCGGTCAATTTGCTATGTCATGACAAGATGATTCAAACTACAGTTTGGACTGN
CAATGCTTGCTTGTTAATGCCCAATCACAAAGGAGTTGTTTAACCCTATCTTTACATACACTGTCTTGTGTTTAAAAAAA
AGTACTAGAAATCACATTTCGATCCAGCTTCATCCTGCAGCCCAATGTGGTTGGCAAACTTGTTCTACTACCCATCGGCG
GCCTGGAGCGCCGTGACGAGGGCCATGAAGAGGTTGATGATGTCGAGGTAGAGCGTGATGGCGGCGGCCACGTACTCGTC
GNAGGTGTATCGCTTGANGAGGTTGTCGGTGTCGTAGATAATGAACCCGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis