Browse Element(s) Details


OsAffx.21102.1.A1_at

Description gb:NM_193998.1
DB_XREF= gi:34915079
GEN=P0514H03.16
TID=OsAffx.21102.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0514H03.16 (P0514H03.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g580301/11acetyltransferase, GNAT family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57950OsAffx.25750.1.S1_at11/113+32949889..32953330inositol-1, 4, 5-trisphosphate 5-Phosphatase-like protein, putative
LOC_Os03g57960Os.8208.1.S1_at11/113+32958969..32961879Cupin family protein, expressed
LOC_Os03g57970Os.18599.1.S1_at11/113+32961950..32962874Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_s_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57990Os.55459.1.S1_at10/113+32966943..32968039Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g58000OsAffx.13536.1.S1_at11/113+32970055..32971515expressed protein
LOC_Os03g58010Os.26768.1.S1_at11/113+32973610..32974488acetyltransferase, GNAT family protein, expressed
LOC_Os03g58020NANA3+32975352..32975885acetyltransferase, GNAT family protein, expressed
LOC_Os03g58030OsAffx.21102.1.A1_at1/113+32976407..32976916acetyltransferase, GNAT family protein
LOC_Os03g58040Os.5406.1.S1_at11/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58040OsAffx.21102.2.S1_x_at3/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58050Os.28088.1.S1_at11/113+32984458..3298634240S ribosomal protein S18, putative, expressed
LOC_Os03g58060Os.19368.1.S1_at11/113+32988357..329993555'-3' exoribonuclease, putative, expressed
LOC_Os03g58070Os.14883.1.S1_a_at11/113+33000291..33003846hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21102.1.A1_at--342--471Chr01:14527051..14527075 (25 bp)
ATCTCCGCTGATCCTCTTGCCGAGG
NONE
OsAffx.21102.1.A1_at--705--551Chr01:14527061..14527085 (25 bp)
ATCCTCTTGCCGAGGCGCTTGTCGA
NONE
OsAffx.21102.1.A1_at--128--10711Chr01:14527067..14527091 (25 bp)
TTGCCGAGGCGCTTGTCGACGTCGA
NONE
OsAffx.21102.1.A1_at--946--4051Chr01:14527071..14527095 (25 bp)
CGAGGCGCTTGTCGACGTCGACAAC
NONE
OsAffx.21102.1.A1_at--664--6211Chr01:14527138..14527162 (25 bp)
GAGGCCGTGCTGTGCAACTACTGTG
NONE
OsAffx.21102.1.A1_at--325--7311Chr01:14527144..14527168 (25 bp)
GTGCTGTGCAACTACTGTGTCGTCA
NONE
OsAffx.21102.1.A1_at--619--4731Chr01:14527146..14527170 (25 bp)
GCTGTGCAACTACTGTGTCGTCAAG
NONE
OsAffx.21102.1.A1_at--63--7351Chr01:14527149..14527173 (25 bp)
GTGCAACTACTGTGTCGTCAAGGGC
NONE
OsAffx.21102.1.A1_at--657--5151Chr01:14527151..14527175 (25 bp)
GCAACTACTGTGTCGTCAAGGGCCA
NONE
OsAffx.21102.1.A1_at--659--2531Chr01:14527153..14527177 (25 bp)
AACTACTGTGTCGTCAAGGGCCAGC
NONE
OsAffx.21102.1.A1_at--229--4032Chr03:32976850..32976874 (25 bp)
CGTCAAGGGCCAGCTCAGGGACATG
LOC_Os03g58030
Target Sequence 
ATCTCCGCTGATCCTCTTGCCGAGGCGCTTGTCGACGTCGACAACGCGGCGTCGCGGCGCGCGCTCGAGAAGGCCGGGTT
CCAGCAGGAGGCCGTGCTGTGCAACTACTGTGTCGTCAAGGGCCAGCTCAGGGACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21102.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis