Browse Element(s) Details


Os.26768.1.S1_at

Description gb:CA765510
DB_XREF= gi:27547229
DB_XREF=AF53-Rpf_07_M13_T7_055.ab1
CLONE=C0002605
TID=Os.26768.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.26768 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180763.1 (A.thaliana) putative alanine acetyl transferase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5801011/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57950OsAffx.25750.1.S1_at11/113+32949889..32953330inositol-1, 4, 5-trisphosphate 5-Phosphatase-like protein, putative
LOC_Os03g57960Os.8208.1.S1_at11/113+32958969..32961879Cupin family protein, expressed
LOC_Os03g57970Os.18599.1.S1_at11/113+32961950..32962874Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_s_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57990Os.55459.1.S1_at10/113+32966943..32968039Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g58000OsAffx.13536.1.S1_at11/113+32970055..32971515expressed protein
LOC_Os03g58010Os.26768.1.S1_at11/113+32973610..32974488acetyltransferase, GNAT family protein, expressed
LOC_Os03g58020NANA3+32975352..32975885acetyltransferase, GNAT family protein, expressed
LOC_Os03g58030OsAffx.21102.1.A1_at1/113+32976407..32976916acetyltransferase, GNAT family protein
LOC_Os03g58040Os.5406.1.S1_at11/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58040OsAffx.21102.2.S1_x_at3/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58050Os.28088.1.S1_at11/113+32984458..3298634240S ribosomal protein S18, putative, expressed
LOC_Os03g58060Os.19368.1.S1_at11/113+32988357..329993555'-3' exoribonuclease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26768.1.S1_at--853--4791Chr03:32974058..32974082 (25 bp)
GCTCGTCGACGTGCGGAACGCGGCG
LOC_Os03g58010
Os.26768.1.S1_at--1001--9211Chr03:32974188..32974212 (25 bp)
TCCACTGATCCGCTCGTCAGCTGAT
LOC_Os03g58010
Os.26768.1.S1_at--832--8851Chr03:32974193..32974217 (25 bp)
TGATCCGCTCGTCAGCTGATGCTGA
LOC_Os03g58010
Os.26768.1.S1_at--700--551Chr03:32974195..32974219 (25 bp)
ATCCGCTCGTCAGCTGATGCTGATG
LOC_Os03g58010
Os.26768.1.S1_at--999--612Chr03:32974211..32974235 (25 bp)
ATGCTGATGCATCATCCGTGTAATT
LOC_Os03g58010
Os.26768.1.S1_at--758--8731Chr03:32974229..32974253 (25 bp)
TGTAATTAGTTAACCACGTTCAAAT
LOC_Os03g58010
Os.26768.1.S1_at--1044--6751Chr03:32974237..32974261 (25 bp)
GTTAACCACGTTCAAATTGCGTGCA
LOC_Os03g58010
Os.26768.1.S1_at--245--1711Chr03:32974241..32974265 (25 bp)
ACCACGTTCAAATTGCGTGCAAATT
LOC_Os03g58010
Os.26768.1.S1_at--559--10691Chr03:32974253..32974277 (25 bp)
TTGCGTGCAAATTATGAGAGTGGAT
LOC_Os03g58010
Os.26768.1.S1_at--1131--6011Chr03:32974268..32974292 (25 bp)
GAGAGTGGATTGTTGTTACAGATCA
LOC_Os03g58010
Os.26768.1.S1_at--441--7511Chr03:32974272..32974296 (25 bp)
GTGGATTGTTGTTACAGATCAATAA
LOC_Os03g58010
Target Sequence 
GCTCGTCGACGTGCGGAACGCGGCGTCGCAGCGCGTGCTGGAGAAGGCCGGGTTCCGGCGGGAGGCCGTGCTGCGCAGCT
ACTGCGTGCTCAAAGGGGAGGTCAGGGACATGGTCATNTACAGCTTCATCTCCACTGATCCGCTCGTCAGCTGATGCTGA
TGCATCATCCGTGTAATTAGTTAACCACGTTCAAATTGCGTGCAAATTATGAGAGTGGATTGTTGTTACAGATCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis