Browse Element(s) Details


Os.49768.1.S1_at

Description gb:AY526867.1
DB_XREF= gi:42556006
GEN=ZFP48
TID=Os.49768.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49768 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative zinc finger transcription factor (ZFP48) mRNA, complete cds.
PROD=putative zinc finger transcription factor
FL= gb:AY526867.1 gb:AK108205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5790011/11AN1-like Zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57854Os.49622.1.S1_at11/113+32896843..32903489BTB/POZ domain containing protein, expressed
LOC_Os03g57870Os.28012.1.S1_at9/113+32903614..32906711Activator 1 38 kDa subunit, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_s_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57890Os.12059.1.S1_at11/113+32913214..32915847AN1-like Zinc finger family protein, expressed
LOC_Os03g57900Os.49768.1.S1_at11/113+32921106..32921903AN1-like Zinc finger family protein, expressed
LOC_Os03g57910Os.52448.1.S1_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.1.S1_x_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.2.S1_at5/113+32923450..32925085expressed protein
LOC_Os03g57920Os.55594.1.S1_at11/113+32925978..32927052AN1-like Zinc finger family protein, expressed
LOC_Os03g57930OsAffx.13535.1.S1_at11/113+32927968..32928849expressed protein
LOC_Os03g57940Os.21838.1.S1_at11/113+32938457..32945832protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49768.1.S1_at--523--5691Chr03:32921838..32921862 (25 bp)
GTTCTCGCCCGAAGAAGGAAAGCGC
LOC_Os03g57900
Os.49768.1.S1_at--531--952Chr01:15688690..15688828 (24 bp)
AGGAAAGCGCCATGGCGTCGATGAA
NONE
Os.49768.1.S1_at--221--6311Chr03:32921804..32921828 (25 bp)
GATGAAGCGGAAGTGCCCCGATGAC
LOC_Os03g57900
Os.49768.1.S1_at--806--1131Chr03:32921793..32921817 (25 bp)
AGTGCCCCGATGACGAGACGGCCTG
LOC_Os03g57900
Os.49768.1.S1_at--601--4771Chr03:32921733..32921757 (25 bp)
GCTGCGGATTCTTCGGCTCCGAGGC
LOC_Os03g57900
Os.49768.1.S1_at--674--3271Chr03:32921705..32921729 (25 bp)
CAACAACATGTGCTCCCGGTGCTAC
LOC_Os03g57900
Os.49768.1.S1_at--1151--2471Chr03:32921632..32921656 (25 bp)
AACAGCGACCTCGAGCTGGTTGGCG
LOC_Os03g57900
Os.49768.1.S1_at--610--2951Chr03:32921587..32921611 (25 bp)
AAGGCCAGGATGAGCGCCGTCGTCC
LOC_Os03g57900
Os.49768.1.S1_at--859--7231Chr03:32921560..32921584 (25 bp)
GTCGCCGTCGCGTCATCTTCATCGG
LOC_Os03g57900
Os.49768.1.S1_at--368--2211Chr03:32921325..32921349 (25 bp)
ACAAGCTGGCCACCCGGATTTGAGC
LOC_Os03g57900
Os.49768.1.S1_at--1130--9511Chr03:32921295..32921319 (25 bp)
TCTCTCTCTTCCATGGAATCCAACA
LOC_Os03g57900
Target Sequence 
GTTCTCGCCCGAAGAAGGAAAGCGCCATGGCGTCGATGAAGCGGAAGTGCCCCGATGACGAGACGGCCTGCGGCTCCGGC
GCCGGCGCCGCCATGTGCGTCACCGGCTGCGGATTCTTCGGCTCCGAGGCCACCAACAACATGTGCTCCCGGTGCTACCG
CGAGCACTCCGCGGACAACGACGCCGTGGAGGAGGCGGCGGCAGCCAACAGCGACCTCGAGCTGGTTGGCGTGGCGGAGA
CGACGACGAAGAAGGCCAGGATGAGCGCCGTCGTCCCCGTCGCCGTCGCGTCATCTTCATCGGCGGCGGCAGAGCAGCCG
GCGGCGAAGGCTGCTACGGCGCCGAACCGGTGCGCGGCGTGCCGGAAGAAGGTGGGGCTGACGGGGTTCAAGTGCCGGTG
CGGCGGCAACTTCTGTGGCGGCCACCGCCACGCCGACGCCCACGGCTGCGGCTTCGACTACAAGAGCGCCGGGAAGGAGC
AGATCGCCAAGCAGAACCCGCTCGTCGTCGCCGACAAGCTGGCCACCCGGATTTGAGCTCTCCTCTCTCTCTTCCATGGA
ATCCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis