Browse Element(s) Details


OsAffx.10198.2.A1_at

Description tigr:9635.m01313
TID=OsAffx.10198.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1331011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13270Os.10804.1.S1_at11/117+7619801..7624987SNF7 family protein, expressed
LOC_Os07g13280OsAffx.5312.1.S1_s_at11/117+7625853..7627486expressed protein
LOC_Os07g13290OsAffx.5313.1.S1_at3/117+7629167..7629699hypothetical protein
LOC_Os07g13300NANA7+7630626..7633409RNA recognition motif family protein, expressed
LOC_Os07g13310OsAffx.10198.2.A1_at11/117+7634671..7635716hypothetical protein
LOC_Os07g13319OsAffx.1448.1.S1_at11/117+7636890..7638222hypothetical protein
LOC_Os07g13319OsAffx.20869.1.S1_at1/117+7636890..7638222hypothetical protein
LOC_Os07g13330OsAffx.22422.1.S1_at11/117+7644046..7644327hypothetical protein
LOC_Os07g13340NANA7+7646670..7655594retrotransposon protein, putative, unclassified
LOC_Os07g13350OsAffx.32101.3.S1_x_at11/117+7659453..7662678hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10198.2.A1_at--268--10831Chr07:7635671..7635695 (25 bp)
TTGGTAATCCTAGGCCTATCCCTTG
LOC_Os07g13310
OsAffx.10198.2.A1_at--275--5511Chr07:7635570..7635594 (25 bp)
GAACAAAGACCGCATCCCTGGAACT
LOC_Os07g13310
OsAffx.10198.2.A1_at--392--1351Chr07:7635543..7635567 (25 bp)
AGAGTTCAACCATCTGGGCGGCTCC
LOC_Os07g13310
OsAffx.10198.2.A1_at--1042--1711Chr07:7635514..7635538 (25 bp)
ACCAGCACACGCGTGGTTGTGAGAA
LOC_Os07g13310
OsAffx.10198.2.A1_at--309--1071Chr07:7635462..7635486 (25 bp)
AGGGTTCTGATCGAAGCTGCTTGCA
LOC_Os07g13310
OsAffx.10198.2.A1_at--753--1331Chr07:7635438..7635462 (25 bp)
AGAGTTGCAGTTCATCATGGCCGTT
LOC_Os07g13310
OsAffx.10198.2.A1_at--711--411Chr07:7635425..7635449 (25 bp)
ATCATGGCCGTTGATCATGGCTATT
LOC_Os07g13310
OsAffx.10198.2.A1_at--556--3491Chr07:7635410..7635434 (25 bp)
CATGGCTATTGATCGGCTACGTAGT
LOC_Os07g13310
OsAffx.10198.2.A1_at--284--9451Chr07:7635398..7635422 (25 bp)
TCGGCTACGTAGTTTATGCTTTGTT
LOC_Os07g13310
OsAffx.10198.2.A1_at--1011--6931Chr07:7635216..7635240 (25 bp)
GTAGTACTTGTTTGTCAGCTTAACT
LOC_Os07g13310
OsAffx.10198.2.A1_at--502--231Chr07:7635148..7635172 (25 bp)
ATATTTTCTGGCTGATGCAACCAAT
LOC_Os07g13310
Target Sequence 
TTGGTAATCCTAGGCCTATCCCTTGTCGCTCTCCTTGTCCTCACCACCATCCCGGAGGTCGCTGGTGGGCGACCCGGCGG
CTACATCGACTACGGTGCCATGAACAAAGACCGCATCCCTGGAACTCCAGAGTTCAACCATCTGGGCGGCTCCGCCAACC
AGCACACGCGTGGTTGTGAGAAGCAGTTGCATTGCAGGGGTAAAAGGCGAGGGTTCTGATCGAAGCTGCTTGCAGAGTTG
CAGTTCATCATGGCCGTTGATCATGGCTATTGATCGGCTACGTAGTTTATGCTTTGTTTTGGTGCTATAATATATAGTTT
TTTAATAACACTTAGAACAACACATTGTTCAGATAGCTAGGTAATTTGGTGCTACAATAGGATTTCAATAACGCTTTAGT
TATAACAGCAAATTCTTATTTGGATATGTAATCATTCCTTTATGTTAAAGTGTCTGTAGTACTTGTTTGTCAGCTTAACT
TTTTTTTAAAAAAAAATGATTGGTGCATATGTGTTGAGTTTAAATATTTTCTGGCTGATGCAACCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10198.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis