Browse Element(s) Details


OsAffx.32101.3.S1_x_at

Description tigr:9635.m01317
TID=OsAffx.32101.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1335011/11hypothetical protein
LOC_Os12g397306/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13310OsAffx.10198.2.A1_at11/117+7634671..7635716hypothetical protein
LOC_Os07g13319OsAffx.1448.1.S1_at11/117+7636890..7638222hypothetical protein
LOC_Os07g13319OsAffx.20869.1.S1_at1/117+7636890..7638222hypothetical protein
LOC_Os07g13330OsAffx.22422.1.S1_at11/117+7644046..7644327hypothetical protein
LOC_Os07g13340NANA7+7646670..7655594retrotransposon protein, putative, unclassified
LOC_Os07g13350OsAffx.32101.3.S1_x_at11/117+7659453..7662678hypothetical protein
LOC_Os07g13360OsAffx.4155.1.S1_at1/117+7665062..7665406hypothetical protein
LOC_Os07g13370Os.44296.1.S1_at11/117+7666690..7667091expressed protein
LOC_Os07g13380OsAffx.5316.1.S1_at11/117+7668345..7668584hypothetical protein
LOC_Os07g13390OsAffx.22940.1.S1_s_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.5.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390Os.35344.3.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390Os.35344.18.S1_x_at10/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.2.S1_s_at9/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.5.S1_at9/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.2.S1_at8/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13390OsAffx.22940.3.S1_x_at6/117+7673414..7680964Transposable element protein, putative, MuDR
LOC_Os07g13400OsAffx.22421.2.S1_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13400OsAffx.16244.1.S1_x_at1/117+7686410..7688767transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32101.3.S1_x_at--232--2992Chr12:24502579..24502603 (25 bp)
AATGTCACAACTCATGTGTCTGCCC
LOC_Os12g39730
OsAffx.32101.3.S1_x_at--568--6771Chr07:7660053..7660077 (25 bp)
GTTACTATTGTTACCTCCTCGAAAT
LOC_Os07g13350
OsAffx.32101.3.S1_x_at--669--691Chr07:7660030..7660054 (25 bp)
ATGAGACTGCACTCAACTCGTCAGT
LOC_Os07g13350
OsAffx.32101.3.S1_x_at--385--6292Chr12:24502444..24502468 (25 bp)
GATGATATAGGCACTCTGCCCACAG
LOC_Os12g39730
OsAffx.32101.3.S1_x_at--767--4552Chr12:24502427..24502451 (25 bp)
GCCCACAGATCTTCTTACAGGCGAT
LOC_Os12g39730
OsAffx.32101.3.S1_x_at--1059--172Chr12:24502404..24502428 (25 bp)
ATTTTTCTGATCTAGCCACTCTTTT
LOC_Os12g39730
OsAffx.32101.3.S1_x_at--731--2632Chr12:24502358..24502382 (25 bp)
AACCAGTCTCTGTTTAGATTCGCCC
LOC_Os12g39730
OsAffx.32101.3.S1_x_at--684--6571Chr07:7659857..7659881 (25 bp)
GATTCGCCCATTTTTCCAGGTGCTA
LOC_Os07g13350
OsAffx.32101.3.S1_x_at--280--4652Chr12:24502271..24502295 (25 bp)
GCGTACCGAGGCTTGTGCTGATACA
LOC_Os12g39730
OsAffx.32101.3.S1_x_at--90--9531Chr07:7659647..7659770 (25 bp)
TCTCATCACGCTTCATTGACTGGAG
LOC_Os07g13350
OsAffx.32101.3.S1_x_at--435--2591Chr07:7659545..7659569 (25 bp)
AACGTAGACTCTGGTGCATGGGAAA
LOC_Os07g13350
Target Sequence 
AATGTCACAACTCATGTGTCTGCCCAAGCCTCACAACAGGAGTTACTATTGTTACCTCCTCGAAATGAGACTGCACTCAA
CTCGTCAGTCATGACGCATATCGACCCCTACAGTGAAGGGTTGGCTATTCCACATGATGATATAGGCACTCTGCCCACAG
ATCTTCTTACAGGCGATTTTTCTGATCTAGCCACTCTTTTGGAAGGAGGGGCAAACCCTGAAACCAGTCTCTGTTTAGAT
TCGCCCATTTTTCCAGGTGCTACTCAAAAGGACAACGTTAATTCGCATATCTCAGAGGACGATGAGACGCGTACCGAGGC
TTGTGCTGATACAGGAAAAGGGGGCACCTCTCATCACGCTTCATTGACTGGAGTTGAAGAGTTGTCCAATGAATCCAAGA
AGTTATCTATGGATGTTGAGCAAATCGTCGCACAAATTCCAAAGGCACCGAACGTAGACTCTGGTGCATGGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32101.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis