Browse Element(s) Details


OsAffx.1448.1.S1_at

Description gb:NM_186731.1
DB_XREF= gi:34900547
TID=OsAffx.1448.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0565A07.5 (P0565A07.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1331911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13270Os.10804.1.S1_at11/117+7619801..7624987SNF7 family protein, expressed
LOC_Os07g13280OsAffx.5312.1.S1_s_at11/117+7625853..7627486expressed protein
LOC_Os07g13290OsAffx.5313.1.S1_at3/117+7629167..7629699hypothetical protein
LOC_Os07g13300NANA7+7630626..7633409RNA recognition motif family protein, expressed
LOC_Os07g13310OsAffx.10198.2.A1_at11/117+7634671..7635716hypothetical protein
LOC_Os07g13319OsAffx.1448.1.S1_at11/117+7636890..7638222hypothetical protein
LOC_Os07g13319OsAffx.20869.1.S1_at1/117+7636890..7638222hypothetical protein
LOC_Os07g13330OsAffx.22422.1.S1_at11/117+7644046..7644327hypothetical protein
LOC_Os07g13340NANA7+7646670..7655594retrotransposon protein, putative, unclassified
LOC_Os07g13350OsAffx.32101.3.S1_x_at11/117+7659453..7662678hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1448.1.S1_at--206--3831Chr07:7638168..7638192 (25 bp)
CTGCGTAGCTCCATCTCATGCGTCG
LOC_Os07g13319
OsAffx.1448.1.S1_at--221--4331Chr07:7638158..7638182 (25 bp)
CCATCTCATGCGTCGCCACCGTGGA
LOC_Os07g13319
OsAffx.1448.1.S1_at--412--1791Chr07:7638126..7638150 (25 bp)
ACCGACAACCGTCACTCATGTGTCG
LOC_Os07g13319
OsAffx.1448.1.S1_at--508--5611Chr07:7638123..7638147 (25 bp)
GACAACCGTCACTCATGTGTCGTGT
LOC_Os07g13319
OsAffx.1448.1.S1_at--257--2211Chr07:7638122..7638146 (25 bp)
ACAACCGTCACTCATGTGTCGTGTC
LOC_Os07g13319
OsAffx.1448.1.S1_at--1152--2611Chr07:7638120..7638144 (25 bp)
AACCGTCACTCATGTGTCGTGTCCG
LOC_Os07g13319
OsAffx.1448.1.S1_at--892--7091Chr07:7638116..7638140 (25 bp)
GTCACTCATGTGTCGTGTCCGCTGT
LOC_Os07g13319
OsAffx.1448.1.S1_at--702--9691Chr07:7638115..7638139 (25 bp)
TCACTCATGTGTCGTGTCCGCTGTC
LOC_Os07g13319
OsAffx.1448.1.S1_at--112--4551Chr07:7638069..7638093 (25 bp)
GCCCTGCCTGCCAGCAGTAGAGAGA
LOC_Os07g13319
OsAffx.1448.1.S1_at--682--4191Chr07:7638068..7638092 (25 bp)
CCCTGCCTGCCAGCAGTAGAGAGAA
LOC_Os07g13319
OsAffx.1448.1.S1_at--1083--9171Chr07:7638065..7638089 (25 bp)
TGCCTGCCAGCAGTAGAGAGAAAAC
LOC_Os07g13319
Target Sequence 
CTGCGTAGCTCCATCTCATGCGTCGCCACCGTGGACGCGGCCACCGACAACCGTCACTCATGTGTCGTGTCCGCTGTCGC
CGCCCGTCCTCCGATCCCCGCCCTGCCTGCCAGCAGTAGAGAGAAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis