Browse Element(s) Details


OsAffx.8091.1.S1_at

Description gb:NM_196670.1
DB_XREF= gi:37534699
TID=OsAffx.8091.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative non-LTR retroelement reverse transcriptase (OSJNBb0040I11.6), mRNA.
PROD=putative non-LTR retroelement reversetranscriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3013011/11retrotransposon protein, putative, unclassified
LOC_Os08g195203/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30090Os.46458.1.S1_at11/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_x_at10/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_at9/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.21252.1.S1_at1/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30100Os.50630.1.S1_x_at11/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30100Os.36273.1.S1_at1/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30109NANA10+15316196..15316562NA
LOC_Os10g30120NANA10+15319073..15319463laccase, putative
LOC_Os10g30130OsAffx.8091.1.S1_at11/1110+15320842..15327031retrotransposon protein, putative, unclassified
LOC_Os10g30140OsAffx.30603.2.S1_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.2.S1_x_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.4.S1_x_at2/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30150Os.5338.1.S1_at11/1110+15334244..15335177universal stress protein family protein, expressed
LOC_Os10g30156Os.9108.1.S1_a_at11/1110+15343797..15351682Soluble starch synthase 2-1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8091.1.S1_at--342--7471Chr10:15326437..15326461 (25 bp)
GTGTGATACTGAGGATTACCCTTTT
LOC_Os10g30130
OsAffx.8091.1.S1_at--844--9891Chr10:15326465..15326489 (25 bp)
TACTTAGGGATTCGAATGCATCACA
LOC_Os10g30130
OsAffx.8091.1.S1_at--72--7933Chr10:15326583..15326607 (25 bp)
GGTTGGTCCTTATCAATTCAGTGTT
LOC_Os10g30130
OsAffx.8091.1.S1_at--765--1631Chr10:15326617..15326641 (25 bp)
AGCGATATTCATGTTGTCCTTCTTT
LOC_Os10g30130
OsAffx.8091.1.S1_at--1065--10793Chr10:15326630..15326654 (25 bp)
TTGTCCTTCTTTGAGATCCCTAAGG
LOC_Os10g30130
OsAffx.8091.1.S1_at--454--6373Chr10:15326644..15326668 (25 bp)
GATCCCTAAGGGTATTCTCAAAAAG
LOC_Os10g30130
OsAffx.8091.1.S1_at--644--7492Chr10:15326766..15326790 (25 bp)
GTGGTGGCTTGGGTATACAGAACTT
LOC_Os10g30130
OsAffx.8091.1.S1_at--219--7694Chr10:15326850..15326874 (25 bp)
GGGTTTGGCAGGACATTCTTAGGAA
LOC_Os10g30130
OsAffx.8091.1.S1_at--118--3312Chr10:15326899..15326923 (25 bp)
CACACAAGTCGAGAAATGCCCTGGA
LOC_Os10g30130
OsAffx.8091.1.S1_at--240--612Chr10:15326914..15326938 (25 bp)
ATGCCCTGGAGATTCACATTTCTGG
LOC_Os10g30130
OsAffx.8091.1.S1_at--749--6552Chr10:15326924..15326948 (25 bp)
GATTCACATTTCTGGGCTGGGCTAA
LOC_Os10g30130
Target Sequence 
GTGTGATACTGAGGATTACCCTTTTAAATACTTAGGGATTCGAATGCATCACAAGAGAATCAACAATAAGGATTGGCAGG
GTGTGGAGGAGAGGATTCAAAAGAAACTTAGTAGTTGGAAAGGAAAATTTCTCTCGGTAGGAGGAAGGTTGGTCCTTATC
AATTCAGTGTTAAGTAATTTAGCGATATTCATGTTGTCCTTCTTTGAGATCCCTAAGGGTATTCTCAAAAAGCTAGACTA
TTATAGATCTAGATTTTTCTGGCAATGTGATGAACATAAGAAGAAGTATAGGTTAGCAAGATGGAGTGTATTGTGCAAAC
CAAAGGAATGTGGTGGCTTGGGTATACAGAACTTAGAGATACAAAACAAATGCTTGCTTAGCAAATGGTTGTACAAACTC
ATCAATGAAGAAGGGGTTTGGCAGGACATTCTTAGGAATAAATACTTGACTAAGAAAACCATCACACAAGTCGAGAAATG
CCCTGGAGATTCACATTTCTGGGCTGGGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis