Browse Element(s) Details


Os.5338.1.S1_at

Description gb:AK107152.1
DB_XREF= gi:32992361
TID=Os.5338.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5338 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ethylene-responsive protein (OSJNBb0016G17.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-E04, full insert sequence.
FL= gb:AK107152.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3015011/11universal stress protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30100Os.50630.1.S1_x_at11/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30100Os.36273.1.S1_at1/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30109NANA10+15316196..15316562NA
LOC_Os10g30120NANA10+15319073..15319463laccase, putative
LOC_Os10g30130OsAffx.8091.1.S1_at11/1110+15320842..15327031retrotransposon protein, putative, unclassified
LOC_Os10g30140OsAffx.30603.2.S1_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.2.S1_x_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.4.S1_x_at2/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30150Os.5338.1.S1_at11/1110+15334244..15335177universal stress protein family protein, expressed
LOC_Os10g30156Os.9108.1.S1_a_at11/1110+15343797..15351682Soluble starch synthase 2-1, chloroplast precursor, putative, expressed
LOC_Os10g30162Os.46581.1.S1_at11/1110+15352142..15354201Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30170OsAffx.30604.1.S1_x_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30170OsAffx.30604.1.S1_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30180OsAffx.30605.1.S1_at10/1110+15359380..15360457Hsp20/alpha crystallin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5338.1.S1_at--791--8071Chr10:15334443..15334467 (25 bp)
GGAGCTGGTGCTTGTCCATGCCATT
LOC_Os10g30150
Os.5338.1.S1_at--953--7771Chr10:15334449..15334473 (25 bp)
GGTGCTTGTCCATGCCATTGAGCCG
LOC_Os10g30150
Os.5338.1.S1_at--222--8072Chr10:15334640..15334664 (25 bp)
GGAGAACGCGCGGAACCTGCTCGTC
LOC_Os10g30150
Os.5338.1.S1_at--280--2631Chr10:15334653..15334677 (25 bp)
AACCTGCTCGTCAGGGCGAGGCTGA
LOC_Os10g30150
Os.5338.1.S1_at--1032--5892Chr10:15334935..15334959 (25 bp)
GAGCTGCCCGATCATGGTCGTCAAG
LOC_Os10g30150
Os.5338.1.S1_at--412--4411Chr10:15334994..15335018 (25 bp)
GCCACTGCACGAGCAACTGAACTGA
LOC_Os10g30150
Os.5338.1.S1_at--727--1971Chr10:15335009..15335033 (25 bp)
ACTGAACTGATGATGGATCGCCATT
LOC_Os10g30150
Os.5338.1.S1_at--889--3852Chr10:15335015..15335039 (25 bp)
CTGATGATGGATCGCCATTACATCC
LOC_Os10g30150
Os.5338.1.S1_at--873--2092Chr10:15335034..15335058 (25 bp)
ACATCCGGAAGACCAGCTTTCGAGG
LOC_Os10g30150
Os.5338.1.S1_at--805--1351Chr10:15335073..15335097 (25 bp)
AGAGAGAGACACTTGTTTTACCATT
LOC_Os10g30150
Os.5338.1.S1_at--710--3751Chr10:15335108..15335132 (25 bp)
CTCAGTGCTGAATTTGTCCTTCCAA
LOC_Os10g30150
Target Sequence 
GGAGCTGGTGCTTGTCCATGCCATTGAGCCGCTCCACCACGTCATGTTCCCCGTCGGCCCAGGGTCGGCGGTGTACGGCG
CGGCGTCGATGATGGAGGCGGTGCGGGCGGCGCAGGCGGAGAACGCGCGGAACCTGCTCGTCAGGGCGAGGCTGATCTGC
GAGCGGCGTGGGGTGGCCGCGGCGACGGTGGCGGTGGAGGGGGAGCCCCGGGAGGCGCTGTGCCGCGCCGCTGAGGACGC
CGGCGCCGGCCTGCTCGTCGTCGGCAGCCGCGGCCTCGGCGCCCTCAAGAGGGCGTTCCTGGGCAGCGTCAGCGACTACT
GCGCGCACCGCGCGAGCTGCCCGATCATGGTCGTCAAGCCGCCTCCCGACGCCGGCGACGAAGACGACGGCGGCCACTGC
ACGAGCAACTGAACTGATGATGGATCGCCATTACATCCGGAAGACCAGCTTTCGAGGGGGAAAGAGAATCAAGAGAGAGA
CACTTGTTTTACCATTGTTGTTCCTGCTCAGTGCTGAATTTGTCCTTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis