Browse Element(s) Details


OsAffx.30605.1.S1_at

Description tigr:9638.m02588
TID=OsAffx.30605.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3018010/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30150Os.5338.1.S1_at11/1110+15334244..15335177universal stress protein family protein, expressed
LOC_Os10g30156Os.9108.1.S1_a_at11/1110+15343797..15351682Soluble starch synthase 2-1, chloroplast precursor, putative, expressed
LOC_Os10g30162Os.46581.1.S1_at11/1110+15352142..15354201Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30170OsAffx.30604.1.S1_x_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30170OsAffx.30604.1.S1_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30180OsAffx.30605.1.S1_at10/1110+15359380..15360457Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30190OsAffx.18461.1.S1_at11/1110+15360834..15363711potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os10g30200OsAffx.8088.1.S1_at11/1110+15366285..15367061Skp1 family, dimerisation domain containing protein
LOC_Os10g30210OsAffx.30606.1.S1_at11/1110+15368898..15370644expressed protein
LOC_Os10g30220OsAffx.18462.1.S1_at11/1110+15371114..15371945hypothetical protein
LOC_Os10g30230OsAffx.6818.1.S1_at11/1110+15373624..15374238hypothetical protein
LOC_Os10g30240OsAffx.17314.1.S1_s_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class
LOC_Os10g30240OsAffx.17314.1.S1_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class
LOC_Os10g30250NANA10+15383861..15387095transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30605.1.S1_at--416--4791Chr10:15359417..15359441 (25 bp)
GCTCCCGTGTCCTGTCTGAAATCGA
LOC_Os10g30180
OsAffx.30605.1.S1_at--784--4171Chr10:15359444..15359468 (25 bp)
CCCACAGCGAATGGATTCACGGTGA
LOC_Os10g30180
OsAffx.30605.1.S1_at--1106--10471Chr10:15359459..15359483 (25 bp)
TTCACGGTGACGAGTTCGACACGCT
LOC_Os10g30180
OsAffx.30605.1.S1_at--493--9411NONE
TCGTCCTCGACGTTACAGGGTTCAG
NONE
OsAffx.30605.1.S1_at--545--3471Chr10:15360024..15360048 (25 bp)
CAGGGTTCAGCAAGGACCATCTCAA
LOC_Os10g30180
OsAffx.30605.1.S1_at--454--8091Chr10:15360037..15360061 (25 bp)
GGACCATCTCAAGGTCCAGGTGGAG
LOC_Os10g30180
OsAffx.30605.1.S1_at--40--31Chr10:15360117..15360141 (25 bp)
ATTGGCTCCACTTCCTCAAGCGCTT
LOC_Os10g30180
OsAffx.30605.1.S1_at--331--7191Chr10:15360172..15360196 (25 bp)
GTCGGCGATCAAGGTCCAGCTCGAC
LOC_Os10g30180
OsAffx.30605.1.S1_at--281--1091Chr10:15360198..15360222 (25 bp)
AGGGCGTCCTCTACGTCCAGGTGCC
LOC_Os10g30180
OsAffx.30605.1.S1_at--240--8251Chr10:15360369..15360393 (25 bp)
GGCACCGGCAGGTCGTCCTCAACGT
LOC_Os10g30180
OsAffx.30605.1.S1_at--925--4011Chr10:15360403..15360427 (25 bp)
CGTCGTCTTGCTCTGGCTCGTCACG
LOC_Os10g30180
Target Sequence 
GCTCCCGTGTCCTGTCTGAAATCGACCCCCACAGCGAATGGATTCACGGTGACGAGTTCGACACGCTCGTCCTCGACGTT
ACAGGGTTCAGCAAGGACCATCTCAAGGTCCAGGTGGAGGCGTCGGGGAGCCTCAGGATCAGCGGCGAGCGCGCCGTCAA
CGGCGGCGGCCGCCATTGGCTCCACTTCCTCAAGCGCTTCGACCTCCCTCCCGGCGCCGCCGACGACGCGTCGGCGATCA
AGGTCCAGCTCGACAAGGGCGTCCTCTACGTCCAGGTGCCCGGCCCCGGCGCTCCCGCCGCCGCCGGCGGCAGCGACGGC
GAGCAGCAGCAGCAGCAGGAGGGAGAGATCGCCGGCGGCCGCCGCCGCGCGGCGGCGGCGAGGCGCGGCGGGCACCCGGC
GTGGCAGCTCGCCGGGGCGCTGAGCCGGCACCGGCAGGTCGTCCTCAACGTCGTGATCGCCGTCGTCTTGCTCTGGCTCG
TCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis