Browse Element(s) Details


OsAffx.17314.1.S1_s_at

Description gb:NM_196679.1
DB_XREF= gi:37534717
TID=OsAffx.17314.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative mutator-like transposase (OSJNBb0016G17.8), mRNA.
PROD=putative mutator-like transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3024011/11transposon protein, putative, Mutator sub-class
LOC_Os08g3358011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30156Os.9108.1.S1_a_at11/1110+15343797..15351682Soluble starch synthase 2-1, chloroplast precursor, putative, expressed
LOC_Os10g30162Os.46581.1.S1_at11/1110+15352142..15354201Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30170OsAffx.30604.1.S1_x_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30170OsAffx.30604.1.S1_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30180OsAffx.30605.1.S1_at10/1110+15359380..15360457Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30190OsAffx.18461.1.S1_at11/1110+15360834..15363711potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os10g30200OsAffx.8088.1.S1_at11/1110+15366285..15367061Skp1 family, dimerisation domain containing protein
LOC_Os10g30210OsAffx.30606.1.S1_at11/1110+15368898..15370644expressed protein
LOC_Os10g30220OsAffx.18462.1.S1_at11/1110+15371114..15371945hypothetical protein
LOC_Os10g30230OsAffx.6818.1.S1_at11/1110+15373624..15374238hypothetical protein
LOC_Os10g30240OsAffx.17314.1.S1_s_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class
LOC_Os10g30240OsAffx.17314.1.S1_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class
LOC_Os10g30250NANA10+15383861..15387095transposon protein, putative, unclassified
LOC_Os10g30260NANA10+15387735..15393887transposon protein, putative, unclassified
LOC_Os10g30270NANA10+15397056..15397712hypothetical protein
LOC_Os10g30280Os.16605.2.S1_x_at11/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30280Os.16605.1.S1_at10/1110+15401228..15404617F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17314.1.S1_s_at--344--1292Chr08:20832149..20832173 (25 bp)
AGATGCCAGGCCGACCAAAGAAAAA
LOC_Os08g33580
OsAffx.17314.1.S1_s_at--982--3132Chr08:20832237..20832261 (25 bp)
AATTAGATGTCGTCGCTGTGGAAAT
LOC_Os08g33580
OsAffx.17314.1.S1_s_at--599--8592Chr08:20832264..20832288 (25 bp)
TGGTCACAACTCGAGGACATGCTGT
LOC_Os08g33580
OsAffx.17314.1.S1_s_at--403--2172Chr08:20832388..20832412 (25 bp)
ACACGCTGAGTCATATAATCCTCCC
LOC_Os08g33580
OsAffx.17314.1.S1_s_at--991--2972Chr08:20832423..20832447 (25 bp)
CAAGTCACTCAAGCCCATTGCAAAT
LOC_Os08g33580
OsAffx.17314.1.S1_s_at--984--8152Chr08:20832476..20832500 (25 bp)
GGAAAATCCATAGCGACATCATCAA
LOC_Os08g33580
OsAffx.17314.1.S1_s_at--63--6752Chr08:20832522..20832625 (25 bp)
GTTCATCATTTATACAGTCTGGCCA
LOC_Os08g33580
OsAffx.17314.1.S1_s_at--683--3552Chr08:20832664..20832688 (25 bp)
CATCTGCGAAGTCAAGTGCTCAAGC
LOC_Os08g33580
OsAffx.17314.1.S1_s_at--30--1552Chr08:20832686..20832710 (25 bp)
AGCATCGGCGAAGGCATCTGCTGGA
LOC_Os08g33580
OsAffx.17314.1.S1_s_at--698--8032Chr08:20832712..20832736 (25 bp)
GGAGTGCTTCTGTTGTCATTGAAAC
LOC_Os08g33580
OsAffx.17314.1.S1_s_at--947--3892Chr08:20832742..20832766 (25 bp)
CTGGGACTGCTAGCTCATTTGCAAA
LOC_Os08g33580
Target Sequence 
AGATGCCAGGCCGACCAAAGAAAAATAGGAGAAAAGACCCTTCAAAGCCAGTGAAATCTGGAACCAAGTCATCAAAAGTT
GGTACTAAAATTAGATGTCGTCGCTGTGGAAATTATGGTCACAACTCGAGGACATGCTGTGTGAAAATGCAGCAAGAACA
CGCTGAGTCATATAATCCTCCCGCCACCAATGCAAGTCACTCAAGCCCATTGCAAATTGAACCTGCACAGTCGAAGCAAA
CTAAAGGAAAATCCATAGCGACATCATCAAGTAAGAGTAAGATGCCTGAGGGTTCATCATTTATACAGTCTGGCCATAAG
AGAAGACTGGTATCTTTTGGAGAGAGTTCTCAAGCATCTGCGAAGTCAAGTGCTCAAGCATCGGCGAAGGCATCTGCTGG
AGGGAGTGCTTCTGTTGTCATTGAAACCAATGCTGGGACTGCTAGCTCATTTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17314.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis