Browse Element(s) Details


Os.16605.1.S1_at

Description gb:AK103093.1
DB_XREF= gi:32988302
TID=Os.16605.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16605 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0016G17.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118K01, full insert sequence.
FL= gb:AK103093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3028010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30240OsAffx.17314.1.S1_s_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class
LOC_Os10g30240OsAffx.17314.1.S1_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class
LOC_Os10g30250NANA10+15383861..15387095transposon protein, putative, unclassified
LOC_Os10g30260NANA10+15387735..15393887transposon protein, putative, unclassified
LOC_Os10g30270NANA10+15397056..15397712hypothetical protein
LOC_Os10g30280Os.16605.2.S1_x_at11/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30280Os.16605.1.S1_at10/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30290Os.46549.1.S1_at10/1110+15404689..15407515GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g30300OsAffx.8086.1.S1_x_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.16507.1.S1_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300OsAffx.8086.1.S1_at8/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.8779.1.S1_at1/1110+15408198..15411156expressed protein
LOC_Os10g30310Os.46573.1.S1_at11/1110+15412472..15413084Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g30320OsAffx.18463.1.S1_at11/1110+15414010..15417090La domain containing protein
LOC_Os10g30330NANA10+15422597..15423878Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_x_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16605.1.S1_at--927--5391Chr10:15404334..15404358 (25 bp)
GAAGCTGCAATGACCTTTAGGCACA
LOC_Os10g30280
Os.16605.1.S1_at--16--5811Chr10:15404345..15404369 (25 bp)
GACCTTTAGGCACAACCAGCAATAT
LOC_Os10g30280
Os.16605.1.S1_at--919--5191Chr10:15404363..15404387 (25 bp)
GCAATATGTTATTGCTTCCATCTCA
LOC_Os10g30280
Os.16605.1.S1_at--393--6551Chr10:15404398..15404422 (25 bp)
GATTATCTATGTCAATTCCCTAGCA
LOC_Os10g30280
Os.16605.1.S1_at--1012--8731Chr10:15404407..15404431 (25 bp)
TGTCAATTCCCTAGCATGAGTTTTG
LOC_Os10g30280
Os.16605.1.S1_at--265--6851Chr10:15404431..15404455 (25 bp)
GTTTGGTTAGGCAGTTTTAGACTAG
LOC_Os10g30280
Os.16605.1.S1_at--629--5451Chr10:15404468..15404492 (25 bp)
GAACGTTTTAGACTAGTCATTAGCA
LOC_Os10g30280
Os.16605.1.S1_at--1080--5231Chr10:15404509..15404533 (25 bp)
GAATCTAGTTTGGTTTATTCCCTGG
LOC_Os10g30280
Os.16605.1.S1_at--184--8591Chr10:15404519..15404543 (25 bp)
TGGTTTATTCCCTGGTCTGTATATA
LOC_Os10g30280
Os.16605.1.S1_at--1112--9972Chr10:15404568..15404592 (25 bp)
TAGCTAATAATTTGCTTGCAGAAAT
LOC_Os10g30280
Os.16605.1.S1_at--908--731Chr10:15404594..15404618 (25 bp)
ATGTTTATTTTTTGCCTATGTTCTA
NONE
Target Sequence 
GAAGCTGCAATGACCTTTAGGCACAACCAGCAATATGTTATTGCTTCCATCTCATAATGTACATGATTATCTATGTCAAT
TCCCTAGCATGAGTTTTGTTTGGTTAGGCAGTTTTAGACTAGTATTTTTTTGAAGAACGTTTTAGACTAGTCATTAGCAT
GTTATATAGTAAGAAGAATCTAGTTTGGTTTATTCCCTGGTCTGTATATAGTAAATGTACTGGTAAACTATTTATAGCTA
ATAATTTGCTTGCAGAAATGATGTTTATTTTTTGCCTATGTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis