Browse Element(s) Details


Os.46549.1.S1_at

Description gb:AK065583.1
DB_XREF= gi:32975601
TID=Os.46549.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative anter-specific proline-rich protein (OSJNBb0016G17.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034G20, full insert sequence.
FL= gb:AK065583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3029010/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30250NANA10+15383861..15387095transposon protein, putative, unclassified
LOC_Os10g30260NANA10+15387735..15393887transposon protein, putative, unclassified
LOC_Os10g30270NANA10+15397056..15397712hypothetical protein
LOC_Os10g30280Os.16605.2.S1_x_at11/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30280Os.16605.1.S1_at10/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30290Os.46549.1.S1_at10/1110+15404689..15407515GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g30300OsAffx.8086.1.S1_x_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.16507.1.S1_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300OsAffx.8086.1.S1_at8/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.8779.1.S1_at1/1110+15408198..15411156expressed protein
LOC_Os10g30310Os.46573.1.S1_at11/1110+15412472..15413084Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g30320OsAffx.18463.1.S1_at11/1110+15414010..15417090La domain containing protein
LOC_Os10g30330NANA10+15422597..15423878Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_x_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0008415molecular_functionacyltransferase activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46549.1.S1_at--429--4531NONE
GCCGCCTACGGATTCGAGGTGACGA
NONE
Os.46549.1.S1_at--639--5991Chr10:15405146..15405170 (25 bp)
GAGACGTCGACAAATTCCTCTTCTG
LOC_Os10g30290
Os.46549.1.S1_at--1079--8131Chr10:15405121..15405145 (25 bp)
GGACACCTACCATCTCACGGAGAGA
LOC_Os10g30290
Os.46549.1.S1_at--489--6011Chr10:15405102..15405126 (25 bp)
GAGAGAGGCTACAACATCCTGCTCT
LOC_Os10g30290
Os.46549.1.S1_at--564--2591Chr10:15405067..15405091 (25 bp)
AACCAAATACGGCTTCTGAACTTCT
LOC_Os10g30290
Os.46549.1.S1_at--1088--411Chr10:15404984..15405008 (25 bp)
ATCATCTTTCATCAGTGCTTCAGCA
LOC_Os10g30290
Os.46549.1.S1_at--888--5051Chr10:15404959..15404983 (25 bp)
GCAGCTACAGCATTCCAAACTTCAG
LOC_Os10g30290
Os.46549.1.S1_at--893--7891Chr10:15404881..15404905 (25 bp)
GGTTCATTCCATAAGCTGCAGTGTG
LOC_Os10g30290
Os.46549.1.S1_at--1157--4871Chr10:15404853..15404877 (25 bp)
GCTTAGGTTTCAGTTTGCCAGTTAA
LOC_Os10g30290
Os.46549.1.S1_at--849--6331Chr10:15404816..15404840 (25 bp)
GATGCTGAACCCTACACTGAGAAAT
LOC_Os10g30290
Os.46549.1.S1_at--399--1091Chr10:15404698..15404722 (25 bp)
AGTGGGCATCACAGAACCTCGTAAT
LOC_Os10g30290
Target Sequence 
GCCGCCTACGGATTCGAGGTGACGAACCGAGGTTGCTGCGGGACGGGGGTGTTCGAGGTGACGCTGACGTGCAACAGGTA
CACGGCGGATGTGTGCAGAGACGTCGACAAATTCCTCTTCTGGGACACCTACCATCTCACGGAGAGAGGCTACAACATCC
TGCTCTCCCAGATAATAACCAAATACGGCTTCTGAACTTCTTAATTCTGATATAGCAGAATCTTCAGAGAAGAAAACGAG
GAAACTTTGATTTCGTAGTATCATCTTTCATCAGTGCTTCAGCAGCAGCTACAGCATTCCAAACTTCAGTGCTGAAATAT
GTGGTACTAATACTGAAGATCTGATGGGCATGATCCTGGAAAGGTTCATTCCATAAGCTGCAGTGTGGCAGCTTAGGTTT
CAGTTTGCCAGTTAAGTATCTTGCTGTGATGCTGAACCCTACACTGAGAAATGGTGACCAGAATTTTCATGTCAAAAATA
TGTGGAAAATACAGTTTCATCTTTCATGTAAAGGACAAACATTCAGCCTAACAAGCAGCATCAAGAGTGGGCATCACAGA
ACCTCGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis