Browse Element(s) Details


OsAffx.8085.1.S1_x_at

Description tigr:9638.m02604
TID=OsAffx.8085.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expansin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3034011/11Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g060101/11Alpha-expansin 17 precursor, putative, expressed
LOC_Os01g146501/11Alpha-expansin 15 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30280Os.16605.2.S1_x_at11/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30280Os.16605.1.S1_at10/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30290Os.46549.1.S1_at10/1110+15404689..15407515GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g30300OsAffx.8086.1.S1_x_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.16507.1.S1_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300OsAffx.8086.1.S1_at8/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.8779.1.S1_at1/1110+15408198..15411156expressed protein
LOC_Os10g30310Os.46573.1.S1_at11/1110+15412472..15413084Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g30320OsAffx.18463.1.S1_at11/1110+15414010..15417090La domain containing protein
LOC_Os10g30330NANA10+15422597..15423878Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_x_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30350Os.8015.1.S1_at2/1110+15438028..15443253BTB/POZ domain containing protein
LOC_Os10g30360OsAffx.30608.1.S1_at10/1110+15445177..15446072MATH domain containing protein
LOC_Os10g30370Os.24932.3.S1_x_at10/1110+15451118..15458614splicing factor, CC1-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8085.1.S1_x_at--176--9611Chr10:15426233..15426257 (25 bp)
TCATCATGTGCGACGCCTCCAAGAC
LOC_Os10g30340
OsAffx.8085.1.S1_x_at--701--9211Chr10:15426216..15426240 (25 bp)
TCCAAGACCCCCGAGTGGTGCAAGG
LOC_Os10g30340
OsAffx.8085.1.S1_x_at--442--7751Chr10:15425746..15425770 (25 bp)
GGTGAGGTTCACAGTCTCCGGGTTC
LOC_Os10g30340
OsAffx.8085.1.S1_x_at--8--7891Chr10:15425741..15425765 (25 bp)
GGTTCACAGTCTCCGGGTTCAACTA
LOC_Os10g30340
OsAffx.8085.1.S1_x_at--744--5071Chr10:15425684..15425708 (25 bp)
GCAGCGGGTCGGTGCAGGCGATGTC
LOC_Os10g30340
OsAffx.8085.1.S1_x_at--856--7531Chr10:15425640..15425664 (25 bp)
GGGTGGATACCGCTGGCGAGGAACT
LOC_Os10g30340
OsAffx.8085.1.S1_x_at--243--5472Chr10:15425608..15425632 (25 bp)
GAACTGGCAGTGCAACTCGGCGCTC
LOC_Os10g30340
OsAffx.8085.1.S1_x_at--768--3472Chr10:15425577..15425601 (25 bp)
CAGGCGCTGTCGTTCCGGGTCACCT
LOC_Os10g30340
OsAffx.8085.1.S1_x_at--573--8351Chr10:15425547..15425571 (25 bp)
GGCGGCCAGACGCTGCAGATCAACA
LOC_Os10g30340
OsAffx.8085.1.S1_x_at--408--9051Chr10:15425534..15425558 (25 bp)
TGCAGATCAACAGCGTCGTGCCGGA
LOC_Os10g30340
OsAffx.8085.1.S1_x_at--1082--371Chr10:15425529..15425553 (25 bp)
ATCAACAGCGTCGTGCCGGAGTGGT
LOC_Os10g30340
Target Sequence 
TCATCATGTGCGACGCCTCCAAGACCCCCGAGTGGTGCAAGGCCGGCACCGCCGTCACCATCACCGCCACCAACCTCTGC
CCCCCCAACTGGGCCCTCGCCAACGACGACGGCGGCTGGTGCAACCCGCCCCGCCCCCACTTCGACATGTCCCAGCCCGC
CTGGGAGACCATCGGCATCTACCGCGCCGGCATCGTCCCCGTCCTCTACCAACAGGTGAAGTGCTGGAGGCAGGGAGGGG
TGAGGTTCACAGTCTCCGGGTTCAACTACTTCGAGCTGGTGCTCATCACCAACGTCGCCGGCAGCGGGTCGGTGCAGGCG
ATGTCGGTGAAGGGGAGCAAGACGGGGTGGATACCGCTGGCGAGGAACTGGGGCGCGAACTGGCAGTGCAACTCGGCGCT
CGTCGGGCAGGCGCTGTCGTTCCGGGTCACCTCCACCGGCGGCCAGACGCTGCAGATCAACAGCGTCGTGCCGGAGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8085.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis