Browse Element(s) Details


Os.8015.1.S1_at

Description gb:BP432977
DB_XREF= gi:33364628
DB_XREF=BP432977
CLONE=JRC1110
TID=Os.8015.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8015 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g303502/11BTB/POZ domain containing protein
LOC_Os01g537201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30310Os.46573.1.S1_at11/1110+15412472..15413084Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g30320OsAffx.18463.1.S1_at11/1110+15414010..15417090La domain containing protein
LOC_Os10g30330NANA10+15422597..15423878Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_x_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30350Os.8015.1.S1_at2/1110+15438028..15443253BTB/POZ domain containing protein
LOC_Os10g30360OsAffx.30608.1.S1_at10/1110+15445177..15446072MATH domain containing protein
LOC_Os10g30370Os.24932.3.S1_x_at10/1110+15451118..15458614splicing factor, CC1-like family protein, expressed
LOC_Os10g30380OsAffx.30609.1.S1_at11/1110+15460336..15463074Cytochrome P450 family protein
LOC_Os10g30390OsAffx.20305.1.S1_at11/1110+15466886..15470494Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8015.1.S1_at--263--10371Chr03:5644687..5644711 (25 bp)
TTTTTCTTTTCTCTATGCTATCTGA
NONE
Os.8015.1.S1_at--597--4712Chr06:22718289..22718365 (25 bp)
GCTGGAGATGTTGTAGATGTGAACT
NONE
Os.8015.1.S1_at--415--6293Chr10:15439396..15439420 (25 bp)
GATGTTGTAGATGTGAACTTTCTTT
LOC_Os10g30350
Os.8015.1.S1_at--670--10313Chr06:21992556..21992793 (25 bp)
TTTCTTTCTCTATTCTCTGTGATGA
NONE
Os.8015.1.S1_at--780--9552Chr06:22718257..22718279 (23 bp)
TCTTTCTCTATTCTCTGTGATGAAT
NONE
Os.8015.1.S1_at--363--3892Chr03:5644610..5644634 (25 bp)
CTGTGATGAATGCTCTCTTTGTTCT
NONE
Os.8015.1.S1_at--362--3892Chr11:15372545..15372569 (25 bp)
CTGTGATGAATGCTCATTGTTCTGA
NONE
Os.8015.1.S1_at--206--6332Chr11:15372541..15372565 (25 bp)
GATGAATGCTCATTGTTCTGAAGAT
NONE
Os.8015.1.S1_at--603--5354Chr06:30929228..30929250 (23 bp)
GAAGATGTTGTAGATCTGAACAAGT
NONE
Os.8015.1.S1_at--1007--1471Chr03:5644533..5644557 (25 bp)
AGAATATGGATGTTTTGTTGTTTGA
NONE
Os.8015.1.S1_at--168--107910Chr06:30929269..30929293 (25 bp)
TTGTTGTTTGATTTTATTCATTCGA
NONE
Target Sequence 
TTTTTCTTTTCTCTATGCTATCTGATGAATGCTGGAGATGTTGTAGATGTGAACTTTCTTTTTTCTTTCTCTATTCTCTG
TGATGAATGCTCTCTTTGTTCTCTGTGATGAATGCTCATTGTTCTGAAGATGTTGTAGATCTGAACAAGTGTAAAGAATA
TGGATGTTTTGTTGTTTGATTTTATTCATTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis