Browse Element(s) Details


OsAffx.30608.1.S1_at

Description tigr:9638.m02606
TID=OsAffx.30608.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MATH domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3036010/11MATH domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30330NANA10+15422597..15423878Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_x_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30350Os.8015.1.S1_at2/1110+15438028..15443253BTB/POZ domain containing protein
LOC_Os10g30360OsAffx.30608.1.S1_at10/1110+15445177..15446072MATH domain containing protein
LOC_Os10g30370Os.24932.3.S1_x_at10/1110+15451118..15458614splicing factor, CC1-like family protein, expressed
LOC_Os10g30380OsAffx.30609.1.S1_at11/1110+15460336..15463074Cytochrome P450 family protein
LOC_Os10g30390OsAffx.20305.1.S1_at11/1110+15466886..15470494Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30608.1.S1_at--386--4911Chr10:15445367..15445391 (25 bp)
GCTTCTCACTTAATAGCTCCTTTGG
LOC_Os10g30360
OsAffx.30608.1.S1_at--657--9331Chr10:15445454..15445478 (25 bp)
TCGCCGTCAGTGTCCATTTAGTTAT
LOC_Os10g30360
OsAffx.30608.1.S1_at--949--1151Chr10:15445525..15445549 (25 bp)
AGTCATTACGGTGATCTCCTCTCAA
LOC_Os10g30360
OsAffx.30608.1.S1_at--403--1091NONE
AGGGCGCCGACGTTGAGTTCATGAT
NONE
OsAffx.30608.1.S1_at--274--6751Chr10:15445572..15445730 (25 bp)
GTTCATGATGTTCGAGGCTCTACTT
LOC_Os10g30360
OsAffx.30608.1.S1_at--95--8331Chr10:15445721..15445745 (25 bp)
GGCTCTACTTATCTTTATCTACACG
LOC_Os10g30360
OsAffx.30608.1.S1_at--725--6471Chr10:15445812..15445836 (25 bp)
GATACGTATGGACTGCAGAGGCTCA
LOC_Os10g30360
OsAffx.30608.1.S1_at--753--1391Chr10:15445877..15445901 (25 bp)
AGACTCCCTGGCAATCATGTTGGTG
LOC_Os10g30360
OsAffx.30608.1.S1_at--769--1051Chr10:15445936..15445960 (25 bp)
AGGTGTGCTTTGAGTTCCTCAGCTC
LOC_Os10g30360
OsAffx.30608.1.S1_at--544--3251Chr10:15445963..15445987 (25 bp)
CAACGGCTCTAGTCGAGTTCATGGA
LOC_Os10g30360
OsAffx.30608.1.S1_at--284--1931Chr10:15446012..15446036 (25 bp)
ACGGAGCTGTCCTACTGTTTTGAAG
LOC_Os10g30360
Target Sequence 
GCTTCTCACTTAATAGCTCCTTTGGCTTCCACAAATTCATTAGAAGGGAAGATATGGAGCAATCGAAACATCTCAAGGAC
GACTGCTTCGCCGTCAGTGTCCATTTAGTTATCACCAAGGGAGCACCTTCCGTCAAGGTACCACCATCGAACTTGCACAG
TCATTACGGTGATCTCCTCTCAAGTAAACAGGGCGCCGACGTTGAGTTCATGATGTTCGAGGCTCTACTTATCTTTATCT
ACACGGATATGTTGCCAAAGATGGACCAAGAAGACGAGGTAGCAATGGCTCAACATCTGCTCGTCGCATCGGATACGTAT
GGACTGCAGAGGCTCATGTTGATCTGCGAAGATAGATTATGCAACCATATCAATACAGACTCCCTGGCAATCATGTTGGT
GTTGGCCGAGAAGCACCACTGCATACGTCTTAAGGAGGTGTGCTTTGAGTTCCTCAGCTCCTCAACGGCTCTAGTCGAGT
TCATGGAATCAAGTGACTTTCTGTATTTTATACGGAGCTGTCCTACTGTTTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis