Browse Element(s) Details


OsAffx.20305.1.S1_at

Description tigr:9638.m02609
TID=OsAffx.20305.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3039011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30350Os.8015.1.S1_at2/1110+15438028..15443253BTB/POZ domain containing protein
LOC_Os10g30360OsAffx.30608.1.S1_at10/1110+15445177..15446072MATH domain containing protein
LOC_Os10g30370Os.24932.3.S1_x_at10/1110+15451118..15458614splicing factor, CC1-like family protein, expressed
LOC_Os10g30380OsAffx.30609.1.S1_at11/1110+15460336..15463074Cytochrome P450 family protein
LOC_Os10g30390OsAffx.20305.1.S1_at11/1110+15466886..15470494Cytochrome P450 family protein, expressed
LOC_Os10g30399NANA10+15475440..15475719NA
LOC_Os10g30410Os.46533.1.S1_at11/1110+15477261..15481625Cytochrome P450 family protein, expressed
LOC_Os10g30420Os.46788.1.S1_a_at10/1110+15483705..15488395Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os10g30430OsAffx.20304.1.S1_at11/1110+15491598..15492137heavy metal-associated domain containing protein
LOC_Os10g30440OsAffx.30610.1.S1_at11/1110+15494235..15494615hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20305.1.S1_at--463--5331Chr10:15467404..15467428 (25 bp)
GAAGTGCGGCAAGCTTTCCAAGGAA
LOC_Os10g30390
OsAffx.20305.1.S1_at--304--7451Chr10:15467355..15467379 (25 bp)
GTGTAAACGAGTTGACCTATCTCAA
LOC_Os10g30390
OsAffx.20305.1.S1_at--804--10371Chr10:15467286..15467310 (25 bp)
TTTTAGGCCCTCGTAAATGCCGAGA
LOC_Os10g30390
OsAffx.20305.1.S1_at--245--2831Chr10:15467253..15467277 (25 bp)
AAGTTATGGGCTACGACATACCGAA
LOC_Os10g30390
OsAffx.20305.1.S1_at--254--6091Chr10:15467173..15467197 (25 bp)
GATGATGCCGAAGAGTTTCAACCAG
LOC_Os10g30390
OsAffx.20305.1.S1_at--955--4691Chr10:15467068..15467092 (25 bp)
GCGGCTATGAACCTTGGCATTGCAA
LOC_Os10g30390
OsAffx.20305.1.S1_at--192--71Chr10:15467050..15467074 (25 bp)
ATTGCAAATGTAGAGCTCCCCTTAG
LOC_Os10g30390
OsAffx.20305.1.S1_at--107--10011Chr10:15467028..15467052 (25 bp)
TAGCTAGCCTTCTGTATCATTTTGA
LOC_Os10g30390
OsAffx.20305.1.S1_at--921--1231Chr10:15466998..15467022 (25 bp)
AGTTGCCTGATGGAATGATGCCTGA
LOC_Os10g30390
OsAffx.20305.1.S1_at--809--3471Chr10:15466960..15466984 (25 bp)
CAGGATGCACCTGGAATACTTGTAG
LOC_Os10g30390
OsAffx.20305.1.S1_at--446--6951Chr10:15466926..15466950 (25 bp)
GTAGCCTAATTATGTGCCCGGTTAC
LOC_Os10g30390
Target Sequence 
GAAGTGCGGCAAGCTTTCCAAGGAAAGAACACCATCACAGAGGATGACGGTGTAAACGAGTTGACCTATCTCAAAATGGT
GATTAAGGAGTCATTGAGGATGCACTGCCCAGTGCCCCTTTTAGGCCCTCGTAAATGCCGAGAGACATGCAAAGTTATGG
GCTACGACATACCGAAAGACACAACTGTATTTGTGAATGCATGGGCAATATGCAGAGACCCAAAATATTGGGATGATGCC
GAAGAGTTTCAACCAGAGAGGTTTGAGAACAAAAGTATCGACTTTAAAGGAAGTAACTTTGAATTCCTTCCATTTGGATC
GGGCCGTAGAATGTGTGCGGCTATGAACCTTGGCATTGCAAATGTAGAGCTCCCCTTAGCTAGCCTTCTGTATCATTTTG
ATTGGAAGTTGCCTGATGGAATGATGCCTGAAGATGTTGACATGCAGGATGCACCTGGAATACTTGTAGGTAAACGCAGT
AGCCTAATTATGTGCCCGGTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis