Browse Element(s) Details


OsAffx.20304.1.S1_at

Description tigr:9638.m02613
TID=OsAffx.20304.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to GMFP5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3043011/11heavy metal-associated domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30390OsAffx.20305.1.S1_at11/1110+15466886..15470494Cytochrome P450 family protein, expressed
LOC_Os10g30399NANA10+15475440..15475719NA
LOC_Os10g30410Os.46533.1.S1_at11/1110+15477261..15481625Cytochrome P450 family protein, expressed
LOC_Os10g30420Os.46788.1.S1_a_at10/1110+15483705..15488395Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os10g30430OsAffx.20304.1.S1_at11/1110+15491598..15492137heavy metal-associated domain containing protein
LOC_Os10g30440OsAffx.30610.1.S1_at11/1110+15494235..15494615hypothetical protein
LOC_Os10g30450OsAffx.6821.1.S1_x_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30450Os.57429.1.S1_s_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30450Os.57429.1.S1_x_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30460Os.29992.2.S1_x_at3/1110+15501344..15502451hypothetical protein
LOC_Os10g30460OsAffx.7866.1.S1_x_at1/1110+15501344..15502451hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20304.1.S1_at--573--5311Chr10:15491628..15491652 (25 bp)
GAAGTGCACTGTAATGGCTGCGCGA
LOC_Os10g30430
OsAffx.20304.1.S1_at--815--3331Chr10:15491634..15491658 (25 bp)
CACTGTAATGGCTGCGCGAGGAAGA
LOC_Os10g30430
OsAffx.20304.1.S1_at--780--851Chr10:15491641..15491665 (25 bp)
ATGGCTGCGCGAGGAAGATCGAGAA
LOC_Os10g30430
OsAffx.20304.1.S1_at--546--9371Chr10:15491659..15491683 (25 bp)
TCGAGAAGACGATCAAGAAAATTTC
LOC_Os10g30430
OsAffx.20304.1.S1_at--476--571Chr10:15491895..15491919 (25 bp)
ATCCAGGCGCGGCTCAAGGCCAAGA
LOC_Os10g30430
OsAffx.20304.1.S1_at--12--4391Chr10:15491914..15491938 (25 bp)
CCAAGATTAAGAGGGACGTCGCCAT
LOC_Os10g30430
OsAffx.20304.1.S1_at--548--1231Chr10:15491917..15491941 (25 bp)
AGATTAAGAGGGACGTCGCCATCGT
LOC_Os10g30430
OsAffx.20304.1.S1_at--393--8731Chr10:15491920..15491944 (25 bp)
TTAAGAGGGACGTCGCCATCGTCAG
LOC_Os10g30430
OsAffx.20304.1.S1_at--93--8251Chr10:15492063..15492087 (25 bp)
GGCAGCGGGAACAGCTTTCGGTACC
LOC_Os10g30430
OsAffx.20304.1.S1_at--12--1931Chr10:15492065..15492089 (25 bp)
CAGCGGGAACAGCTTTCGGTACCCG
LOC_Os10g30430
OsAffx.20304.1.S1_at--373--6991Chr10:15492083..15492107 (25 bp)
GTACCCGCCGTCCTACTTCAGCGAT
LOC_Os10g30430
Target Sequence 
GAAGTGCACTGTAATGGCTGCGCGAGGAAGATCGAGAAGACGATCAAGAAAATTTCAGGGGTGGCGCTGGCGACGGCGAG
CCTCGGGTCGCCGGGGACGGTGGTGGTGCACGGCACCGCCGACGCGGCGGCGATCCAGGCGCGGCTCAAGGCCAAGATTA
AGAGGGACGTCGCCATCGTCAGCATCACCGCCGGCGCCGTCGAGCCACCTCAACAAGCCCCGCCGGCGGCTGCTCCGCCT
CAGCAGGCGGCGCCGCCGGCTGCTCCGCCGCATCAGTACGGCGGCGACTACCGGCAGCACGGCAGCGGGAACAGCTTTCG
GTACCCGCCGTCCTACTTCAGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis