Browse Element(s) Details


OsAffx.6821.1.S1_x_at

Description gb:NM_196696.1
DB_XREF= gi:37534751
TID=OsAffx.6821.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative metal-binding protein (OSJNBa0046P18.5), mRNA.
PROD=putative metal-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3045011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30399NANA10+15475440..15475719NA
LOC_Os10g30410Os.46533.1.S1_at11/1110+15477261..15481625Cytochrome P450 family protein, expressed
LOC_Os10g30420Os.46788.1.S1_a_at10/1110+15483705..15488395Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os10g30430OsAffx.20304.1.S1_at11/1110+15491598..15492137heavy metal-associated domain containing protein
LOC_Os10g30440OsAffx.30610.1.S1_at11/1110+15494235..15494615hypothetical protein
LOC_Os10g30450OsAffx.6821.1.S1_x_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30450Os.57429.1.S1_s_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30450Os.57429.1.S1_x_at11/1110+15497761..15499148heavy metal-associated domain containing protein, expressed
LOC_Os10g30460Os.29992.2.S1_x_at3/1110+15501344..15502451hypothetical protein
LOC_Os10g30460OsAffx.7866.1.S1_x_at1/1110+15501344..15502451hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6821.1.S1_x_at--378--5971Chr10:15498451..15498475 (25 bp)
GAGACGGTGACGCTCAAGATCCGCC
LOC_Os10g30450
OsAffx.6821.1.S1_x_at--1137--2791Chr10:15498466..15498490 (25 bp)
AAGATCCGCCTCCACTGCGAGGGAT
LOC_Os10g30450
OsAffx.6821.1.S1_x_at--947--9211Chr10:15498476..15498500 (25 bp)
TCCACTGCGAGGGATGCATCGACCG
LOC_Os10g30450
OsAffx.6821.1.S1_x_at--62--4571Chr10:15498507..15498530 (24 bp)
GCGCCGCATCTACAAGATCAAAGGG
LOC_Os10g30450
OsAffx.6821.1.S1_x_at--421--5811Chr10:15498651..15498675 (25 bp)
GACGCCGCCAAGGACCTGGTCAAGG
LOC_Os10g30450
OsAffx.6821.1.S1_x_at--540--3871Chr10:15498666..15498690 (25 bp)
CTGGTCAAGGTGACCGGCACCATGG
LOC_Os10g30450
OsAffx.6821.1.S1_x_at--740--9311Chr10:15498703..15498727 (25 bp)
TCCCGGGCTACCTCAAGGACAAGCT
LOC_Os10g30450
OsAffx.6821.1.S1_x_at--517--9732Chr10:15498715..15498739 (25 bp)
TCAAGGACAAGCTCAGCCGGCAAGT
LOC_Os10g30450
OsAffx.6821.1.S1_x_at--568--1571Chr10:15498724..15498748 (25 bp)
AGCTCAGCCGGCAAGTCGAGGTCGT
LOC_Os10g30450
OsAffx.6821.1.S1_x_at--544--4511Chr10:15498927..15498951 (25 bp)
GCCGACGCGGGCATGTTCCAGATGC
LOC_Os10g30450
OsAffx.6821.1.S1_x_at--990--4991Chr10:15498937..15498961 (25 bp)
GCATGTTCCAGATGCCGCCGCAGTA
LOC_Os10g30450
Target Sequence 
GAGACGGTGACGCTCAAGATCCGCCTCCACTGCGAGGGATGCATCGACCGCATCAAGCGCCGCATCTACAAGATCAAAGG
GGTGAAGGATGTGGCGGTGGACGCCGCCAAGGACCTGGTCAAGGTGACCGGCACCATGGACGCCGCCGCGCTCCCGGGCT
ACCTCAAGGACAAGCTCAGCCGGCAAGTCGAGGTCGTCGCGCCAGGCAAGAAGGACGGCGCCGGCGGCGGTGACAAGAAG
GACGGCGGCGGCGGCGACAAGAAGGACAAAAAGGAGGGCGGCGGTGGCGGCGGCGACAAGAAGGACGCCGGCGGCGAGAA
GACGGACAAGGACAAGTCGGCGGCCGCCTCGGCGTCCGTGGCGCCGGTGCCCCTCGCCGACGCGGGCATGTTCCAGATGC
CGCCGCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6821.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis