Browse Element(s) Details


OsAffx.8086.1.S1_at

Description gb:NM_196684.1
DB_XREF= gi:37534727
TID=OsAffx.8086.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0016G17.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g303008/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30250NANA10+15383861..15387095transposon protein, putative, unclassified
LOC_Os10g30260NANA10+15387735..15393887transposon protein, putative, unclassified
LOC_Os10g30270NANA10+15397056..15397712hypothetical protein
LOC_Os10g30280Os.16605.2.S1_x_at11/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30280Os.16605.1.S1_at10/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30290Os.46549.1.S1_at10/1110+15404689..15407515GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g30300OsAffx.8086.1.S1_x_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.16507.1.S1_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300OsAffx.8086.1.S1_at8/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.8779.1.S1_at1/1110+15408198..15411156expressed protein
LOC_Os10g30310Os.46573.1.S1_at11/1110+15412472..15413084Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g30320OsAffx.18463.1.S1_at11/1110+15414010..15417090La domain containing protein
LOC_Os10g30330NANA10+15422597..15423878Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_x_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8086.1.S1_at--493--8671Chr10:15408516..15408724 (25 bp)
TGTCCTTCCCGGTGGTGCCTAGTGA
LOC_Os10g30300
OsAffx.8086.1.S1_at--1118--3631Chr10:15408520..15408728 (25 bp)
CTTCCCGGTGGTGCCTAGTGACACA
LOC_Os10g30300
OsAffx.8086.1.S1_at--712--9311Chr10:15408710..15408730 (21 bp)
TCCCGGTGGTGCCTAGTGACACATC
LOC_Os10g30300
OsAffx.8086.1.S1_at--1019--3971Chr10:15408710..15408733 (24 bp)
CGGTGGTGCCTAGTGACACATCGTG
LOC_Os10g30300
OsAffx.8086.1.S1_at--783--1111Chr10:15408720..15408744 (25 bp)
AGTGACACATCGTGGGGGCTATGCC
LOC_Os10g30300
OsAffx.8086.1.S1_at--404--7591Chr10:15408735..15408758 (24 bp)
GGGCTATGCCCTGCAGTTATCGAGA
LOC_Os10g30300
OsAffx.8086.1.S1_at--713--4871Chr10:15408737..15408758 (22 bp)
GCTATGCCCTGCAGTTATCGAGATA
LOC_Os10g30300
OsAffx.8086.1.S1_at--115--611NONE
ATGCCCTGCAGTTATCGAGATAGTC
NONE
OsAffx.8086.1.S1_at--752--4531NONE
GCCCTGCAGTTATCGAGATAGTCGA
NONE
OsAffx.8086.1.S1_at--199--3451NONE
CAGTTATCGAGATAGTCGATGGGAT
NONE
OsAffx.8086.1.S1_at--694--10791Chr10:15409698..15409722 (25 bp)
TTGTCCCAAAAGATGGTAAGTTGCT
LOC_Os10g30300
Target Sequence 
TGTCCTTCCCGGTGGTGCCTAGTGACACATCGTGGGGGCTATGCCCTGCAGTTATCGAGATAGTCGATGGGATTCCTTAT
CTTGTCCCAAAAGATGGTAAGTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis