Browse Element(s) Details


Os.16605.2.S1_x_at

Description gb:NM_196682.1
DB_XREF= gi:37534723
TID=Os.16605.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16605 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0016G17.11), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3028011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30240OsAffx.17314.1.S1_s_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class
LOC_Os10g30240OsAffx.17314.1.S1_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class
LOC_Os10g30250NANA10+15383861..15387095transposon protein, putative, unclassified
LOC_Os10g30260NANA10+15387735..15393887transposon protein, putative, unclassified
LOC_Os10g30270NANA10+15397056..15397712hypothetical protein
LOC_Os10g30280Os.16605.2.S1_x_at11/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30280Os.16605.1.S1_at10/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30290Os.46549.1.S1_at10/1110+15404689..15407515GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g30300OsAffx.8086.1.S1_x_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.16507.1.S1_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300OsAffx.8086.1.S1_at8/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.8779.1.S1_at1/1110+15408198..15411156expressed protein
LOC_Os10g30310Os.46573.1.S1_at11/1110+15412472..15413084Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g30320OsAffx.18463.1.S1_at11/1110+15414010..15417090La domain containing protein
LOC_Os10g30330NANA10+15422597..15423878Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_x_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16605.2.S1_x_at--1002--3311Chr10:15403113..15403137 (25 bp)
CACTGAACCTATGATGTCGCCTAAA
LOC_Os10g30280
Os.16605.2.S1_x_at--800--6671Chr10:15403357..15403381 (25 bp)
GTTGCTTGCACCATGATCAGCTGAA
LOC_Os10g30280
Os.16605.2.S1_x_at--570--8371Chr10:15403882..15403906 (25 bp)
GGCGAGGCAGTACCATTTTAACTAC
LOC_Os10g30280
Os.16605.2.S1_x_at--1121--10471Chr10:15403899..15403923 (25 bp)
TTAACTACACTACCCCAGATCGAAG
LOC_Os10g30280
Os.16605.2.S1_x_at--385--771Chr10:15404088..15404112 (25 bp)
ATGTGCGGATTTCTACCCCAAGAAC
LOC_Os10g30280
Os.16605.2.S1_x_at--395--2311Chr10:15404116..15404140 (25 bp)
AAAGGCTCCAAAACATGCTCCTCGG
LOC_Os10g30280
Os.16605.2.S1_x_at--802--4151Chr10:15404145..15404169 (25 bp)
CGCGCCTTGAGCTGCTTGATTTCAA
LOC_Os10g30280
Os.16605.2.S1_x_at--735--391Chr10:15404196..15404220 (25 bp)
ACACATTTCCTTCAAAACGTCTGCG
LOC_Os10g30280
Os.16605.2.S1_x_at--729--6751Chr10:15404223..15404247 (25 bp)
GTTCAATGCCACCAGGATTGCCAAG
LOC_Os10g30280
Os.16605.2.S1_x_at--319--6591Chr10:15404238..15404262 (25 bp)
GATTGCCAAGGCCTGTGTCCAAAGC
LOC_Os10g30280
Os.16605.2.S1_x_at--459--2351Chr10:15404258..15404282 (25 bp)
AAAGCTGCATCCTCGACTAGAGTTT
LOC_Os10g30280
Target Sequence 
CACTGAACCTATGATGTCGCCTAAAAGGCTCAACTTTGAGCCATTTAGTGGAACTAAGGGGCAGATCAAGATCATTTGTT
GCTTGCACCATGATCAGCTGAATATTGTTTTCCATGTTTCAAAAAGGATCCGGAAGGCAGTTGAATTGGCGAGGCAGTAC
CATTTTAACTACACTACCCCAGATCGAAGCAGACAGGAACTACTCCAGCACACCACTCCTCTTCCAACAGAACATTGGCC
TTTCATGAGGATTGATGGCAAGGATGTGCGGATTTCTACCCCAAGAACCCCAAAGGCTCCAAAACATGCTCCTCGGCTTG
CGCGCCTTGAGCTGCTTGATTTCAAGCCAATCACTGCTGTTCTTTTCCCAGACACATTTCCTTCAAAACGTCTGCGCCGT
TCAATGCCACCAGGATTGCCAAGGCCTGTGTCCAAAGCTGCATCCTCGACTAGAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16605.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis