Browse Element(s) Details


Os.16507.1.S1_at

Description gb:AK106662.1
DB_XREF= gi:32991871
TID=Os.16507.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-H02, full insert sequence.
FL= gb:AK106662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3030010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30250NANA10+15383861..15387095transposon protein, putative, unclassified
LOC_Os10g30260NANA10+15387735..15393887transposon protein, putative, unclassified
LOC_Os10g30270NANA10+15397056..15397712hypothetical protein
LOC_Os10g30280Os.16605.2.S1_x_at11/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30280Os.16605.1.S1_at10/1110+15401228..15404617F-box domain containing protein, expressed
LOC_Os10g30290Os.46549.1.S1_at10/1110+15404689..15407515GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g30300OsAffx.8086.1.S1_x_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.16507.1.S1_at10/1110+15408198..15411156expressed protein
LOC_Os10g30300OsAffx.8086.1.S1_at8/1110+15408198..15411156expressed protein
LOC_Os10g30300Os.8779.1.S1_at1/1110+15408198..15411156expressed protein
LOC_Os10g30310Os.46573.1.S1_at11/1110+15412472..15413084Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g30320OsAffx.18463.1.S1_at11/1110+15414010..15417090La domain containing protein
LOC_Os10g30330NANA10+15422597..15423878Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed
LOC_Os10g30340OsAffx.8085.1.S1_x_at11/1110+15425482..15426498Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16507.1.S1_at--553--7451NONE
GTGTCCTTCCCGATAGTCGATGGGA
NONE
Os.16507.1.S1_at--42--871Chr10:15409787..15409811 (25 bp)
ATGGCTCAAATATCTGCATTTCTGT
LOC_Os10g30300
Os.16507.1.S1_at--816--471Chr10:15409798..15409822 (25 bp)
ATCTGCATTTCTGTTGTGGTAATAG
LOC_Os10g30300
Os.16507.1.S1_at--197--1771Chr10:15409856..15409880 (25 bp)
ACCTGCGTGCTCTTCTAATTGCTTG
LOC_Os10g30300
Os.16507.1.S1_at--229--4811Chr10:15409864..15409888 (25 bp)
GCTCTTCTAATTGCTTGTTGCTTCA
LOC_Os10g30300
Os.16507.1.S1_at--659--4891Chr10:15409883..15409907 (25 bp)
GCTTCAATAAAGCATTCCCCTGCTG
LOC_Os10g30300
Os.16507.1.S1_at--204--4951Chr10:15409894..15409918 (25 bp)
GCATTCCCCTGCTGATGGGCACTGA
LOC_Os10g30300
Os.16507.1.S1_at--822--6251Chr10:15409907..15409931 (25 bp)
GATGGGCACTGACCAATTTGTTCAT
LOC_Os10g30300
Os.16507.1.S1_at--657--2411Chr10:15409939..15409963 (25 bp)
AAGAAATACTTACATGGCTACTCAT
LOC_Os10g30300
Os.16507.1.S1_at--473--8311Chr10:15409954..15409978 (25 bp)
GGCTACTCATGATTCAGTGGTGTTT
LOC_Os10g30300
Os.16507.1.S1_at--95--731Chr10:15409962..15409986 (25 bp)
ATGATTCAGTGGTGTTTGATTTTTC
LOC_Os10g30300
Target Sequence 
GTGTCCTTCCCGATAGTCGATGGGATTCCTTATCTTGTCCCNAAAGATGGTAAGTTNGCTGGACCACGACCAGGACAAAT
CAGAAGATTGCGGTGCAAAGGATTCTTCCCACAGGCATTGAACANATGGCTCAAATATCTGCATTTCTGTTGTGGTAATA
GTTGGTAAGAATAAAACTTTTGAGATAAACCACNACCTGCGTGCTCTTCTAATTGCTTGTTGCTTCAATAAAGCATTCCC
CTGCTGATGGGCACTGACCAATTTGTTCATCAGGACAAAGAAATACTTACATGGCTACTCATGATTCAGTGGTGTTTGAT
TTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis