Browse Element(s) Details


OsAffx.30604.1.S1_x_at

Description gb:NM_196674.1
DB_XREF= gi:37534707
TID=OsAffx.30604.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0016G17.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3017011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30140OsAffx.30603.2.S1_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.2.S1_x_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.4.S1_x_at2/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30150Os.5338.1.S1_at11/1110+15334244..15335177universal stress protein family protein, expressed
LOC_Os10g30156Os.9108.1.S1_a_at11/1110+15343797..15351682Soluble starch synthase 2-1, chloroplast precursor, putative, expressed
LOC_Os10g30162Os.46581.1.S1_at11/1110+15352142..15354201Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30170OsAffx.30604.1.S1_x_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30170OsAffx.30604.1.S1_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30180OsAffx.30605.1.S1_at10/1110+15359380..15360457Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30190OsAffx.18461.1.S1_at11/1110+15360834..15363711potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os10g30200OsAffx.8088.1.S1_at11/1110+15366285..15367061Skp1 family, dimerisation domain containing protein
LOC_Os10g30210OsAffx.30606.1.S1_at11/1110+15368898..15370644expressed protein
LOC_Os10g30220OsAffx.18462.1.S1_at11/1110+15371114..15371945hypothetical protein
LOC_Os10g30230OsAffx.6818.1.S1_at11/1110+15373624..15374238hypothetical protein
LOC_Os10g30240OsAffx.17314.1.S1_s_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class
LOC_Os10g30240OsAffx.17314.1.S1_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30604.1.S1_x_at--712--5991Chr10:15355162..15355186 (25 bp)
GAGACCGGCTCCAGCTCGGGACGTC
LOC_Os10g30170
OsAffx.30604.1.S1_x_at--346--3391Chr10:15355151..15355175 (25 bp)
CAGCTCGGGACGTCGTCGTCTCGGC
LOC_Os10g30170
OsAffx.30604.1.S1_x_at--22--8633Chr10:15355042..15355066 (25 bp)
TGGTGGCCAACGACGAGCCGACGAC
LOC_Os10g30170
OsAffx.30604.1.S1_x_at--854--4091Chr10:15355021..15355045 (25 bp)
CGACGGCGGAGCACCATCCGAGGAA
LOC_Os10g30170
OsAffx.30604.1.S1_x_at--88--4411Chr10:15354974..15354998 (25 bp)
GCCAGGAACGCCATTGCAACGGACG
LOC_Os10g30170
OsAffx.30604.1.S1_x_at--1029--931Chr10:15354971..15354995 (25 bp)
AGGAACGCCATTGCAACGGACGCGC
LOC_Os10g30170
OsAffx.30604.1.S1_x_at--898--911Chr10:15354786..15354810 (25 bp)
AGGCTACCTCCGCAGGATCTCCAAG
LOC_Os10g30170
OsAffx.30604.1.S1_x_at--446--471Chr10:15354770..15354794 (25 bp)
ATCTCCAAGCGGCTGATGACGACGC
LOC_Os10g30170
OsAffx.30604.1.S1_x_at--885--4551Chr10:15354649..15354673 (25 bp)
GCGCCATCGCGACGGAAGATGAAAT
LOC_Os10g30170
OsAffx.30604.1.S1_x_at--971--2791Chr10:15354634..15354658 (25 bp)
AAGATGAAATCCGAGCTTTCGTCAT
LOC_Os10g30170
OsAffx.30604.1.S1_x_at--279--8971Chr10:15354630..15354654 (25 bp)
TGAAATCCGAGCTTTCGTCATCGCG
LOC_Os10g30170
Target Sequence 
GAGACCGGCTCCAGCTCGGGACGTCGTCGTCTCGGCAGCAGCGCAGCCGCTCCGCCTCGCCGCCGTGCTTCGGCGCCCGC
ACGCGTCGGCAGACAGCGGCGGCGACAAACGGCGAGGCAGTGGTGGCCAACGACGAGCCGACGACGGCGGAGCACCATCC
GAGGAAGAGCGGGCGCCGACCGGCGCCCGCCAGGAACGCCATTGCAACGGACGCGCCCGCCGTCTCGTCAGCCTCATACT
CCTCCCCCACGTCCTCACCTCCCTCCTCGCTCCGCGACCGGCTCCGGCTCGGCCTCACGGCGTCGCCGCCGCGCCGCGCG
CACGACGGCAGCGGCATGTCGCGCTCGCCGGAGGCGGAGAAGGGCGGCGCGGTCGGAGGCTACCTCCGCAGGATCTCCAA
GCGGCTGATGACGACGCGCGGCGCCACCGCCGCCGCGGACGCGGCGGCGCCGTCGGCCACAATGATACCCCGCTCCTCTC
CGCTCGTGGGAGAGGGGAGGAGAAAAGGCGGGAGCGCCATCGCGACGGAAGATGAAATCCGAGCTTTCGTCATCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30604.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis