Browse Element(s) Details


OsAffx.30603.2.S1_at

Description tigr:9638.m02584
TID=OsAffx.30603.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to laccase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3014011/11Multicopper oxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30090Os.46458.1.S1_at11/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_x_at10/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.46458.2.S1_at9/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30090Os.21252.1.S1_at1/1110+15299920..15306465Amino acid permease family protein, expressed
LOC_Os10g30100Os.50630.1.S1_x_at11/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30100Os.36273.1.S1_at1/1110+15308510..15314972Nucleolar protein, putative, expressed
LOC_Os10g30109NANA10+15316196..15316562NA
LOC_Os10g30120NANA10+15319073..15319463laccase, putative
LOC_Os10g30130OsAffx.8091.1.S1_at11/1110+15320842..15327031retrotransposon protein, putative, unclassified
LOC_Os10g30140OsAffx.30603.2.S1_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.2.S1_x_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.4.S1_x_at2/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30150Os.5338.1.S1_at11/1110+15334244..15335177universal stress protein family protein, expressed
LOC_Os10g30156Os.9108.1.S1_a_at11/1110+15343797..15351682Soluble starch synthase 2-1, chloroplast precursor, putative, expressed
LOC_Os10g30162Os.46581.1.S1_at11/1110+15352142..15354201Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30170OsAffx.30604.1.S1_x_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30170OsAffx.30604.1.S1_at11/1110+15354600..15355313hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30603.2.S1_at--926--3371Chr10:15331241..15331265 (25 bp)
CACCAACGCGACAAACAAGTTGTGC
LOC_Os10g30140
OsAffx.30603.2.S1_at--594--4371Chr10:15331243..15331267 (25 bp)
CCAACGCGACAAACAAGTTGTGCAA
LOC_Os10g30140
OsAffx.30603.2.S1_at--863--2591Chr10:15331245..15331269 (25 bp)
AACGCGACAAACAAGTTGTGCAAGG
LOC_Os10g30140
OsAffx.30603.2.S1_at--500--1831Chr10:15331246..15331270 (25 bp)
ACGCGACAAACAAGTTGTGCAAGGG
LOC_Os10g30140
OsAffx.30603.2.S1_at--90--5611Chr10:15331250..15331274 (25 bp)
GACAAACAAGTTGTGCAAGGGACCC
LOC_Os10g30140
OsAffx.30603.2.S1_at--846--3271Chr10:15331252..15331276 (25 bp)
CAAACAAGTTGTGCAAGGGACCCCA
LOC_Os10g30140
OsAffx.30603.2.S1_at--730--2311Chr10:15331254..15331278 (25 bp)
AACAAGTTGTGCAAGGGACCCCAAG
LOC_Os10g30140
OsAffx.30603.2.S1_at--826--2211Chr10:15331255..15331279 (25 bp)
ACAAGTTGTGCAAGGGACCCCAAGG
LOC_Os10g30140
OsAffx.30603.2.S1_at--51--4371Chr10:15331390..15331414 (25 bp)
CCAACAAGCCGGTGAATGCCTTCGT
LOC_Os10g30140
OsAffx.30603.2.S1_at--105--3251Chr10:15331391..15331415 (25 bp)
CAACAAGCCGGTGAATGCCTTCGTC
LOC_Os10g30140
OsAffx.30603.2.S1_at--259--4031Chr10:15331427..15331451 (25 bp)
CGACAACGGCGGCAGGCCCTTGCTA
LOC_Os10g30140
Target Sequence 
CACCAACGCGACAAACAAGTTGTGCAAGGGACCCCAAGGCAACCAGTTCGCGGCGAGCCTCAACAATGTTAGCTTCGAGA
GCCCGGCCATCGACGTCCTCGACGCCTACTACTACGGCTCCGGCCGCGGCGTGTACGAGGAGGACTTCCCCAACAAGCCG
GTGAATGCCTTCGTCAACCCCACCGGCGACAACGGCGGCAGGCCCTTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30603.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis