Browse Element(s) Details


Os.7136.2.S1_x_at

Description gb:NM_193870.1
DB_XREF= gi:34914823
GEN=B1111C09.4
TID=Os.7136.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7136 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative 3-dehydroquinate dehydratase (B1111C09.4), mRNA.
PROD=putative 3-dehydroquinate dehydratase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2775011/11Type I 3-dehydroquinase family protein, expressed
LOC_Os01g277801/11Shikimate/quinate 5-dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27720Os.19624.1.S1_at5/111+15780486..15784678zinc finger family protein, putative, expressed
LOC_Os01g27730Os.6742.1.S1_at11/111+15788950..15793626expressed protein
LOC_Os01g27740Os.22658.1.S1_at11/111+15801150..15805188DnaJ domain containing protein, expressed
LOC_Os01g27750Os.7136.1.S1_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed
LOC_Os01g27750Os.7136.2.S1_x_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed
LOC_Os01g27760OsAffx.23423.1.S1_at11/111+15821755..15823146hypothetical protein
LOC_Os01g27770OsAffx.11231.1.S1_at11/111+15829852..15832481dehydroquinate dehydratase, putative
LOC_Os01g27780Os.7136.2.S1_x_at1/111+15835107..15838538Shikimate/quinate 5-dehydrogenase family protein, expressed
LOC_Os01g27790OsAffx.10711.1.S1_x_at3/111+15841920..15850258retrotransposon protein, putative, unclassified
LOC_Os01g27790OsAffx.10711.1.S1_at1/111+15841920..15850258retrotransposon protein, putative, unclassified
LOC_Os01g27790Os.27544.1.A1_at1/111+15841920..15850258retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7136.2.S1_x_at--967--1091Chr01:15816453..15816477 (25 bp)
AGTGGGCTACAATACTGACTACATT
LOC_Os01g27750
Os.7136.2.S1_x_at--678--2311Chr01:15816606..15816630 (25 bp)
AAAGGATGCTGCCATCTCACCTTTG
LOC_Os01g27750
Os.7136.2.S1_x_at--1093--9571Chr01:15818519..15818543 (25 bp)
TCTTGCTGCTGCAGTGGGTGGTCAT
LOC_Os01g27750
Os.7136.2.S1_x_at--266--612Chr01:15837524..15837548 (25 bp)
ATGCCCTGAGATTAGCCGAGCTTGA
LOC_Os01g27780
Os.7136.2.S1_x_at--1102--7651Chr01:15818586..15818610 (25 bp)
GGGATGATCCTTGCTAATGCGACAT
LOC_Os01g27750
Os.7136.2.S1_x_at--424--5231Chr01:15818617..15818641 (25 bp)
GAATGTACCCCAATGTGGACGGCAC
LOC_Os01g27750
Os.7136.2.S1_x_at--714--5091Chr01:15818638..15818836 (25 bp)
GCACCCCTATCCCAAAGAAAGCATT
LOC_Os01g27750
Os.7136.2.S1_x_at--219--6891Chr01:15818853..15818877 (25 bp)
GTATTTGATGCGGTATATGCCCCGA
LOC_Os01g27750
Os.7136.2.S1_x_at--591--10171Chr01:15818866..15818890 (25 bp)
TATATGCCCCGAAAGTTACCCGGCT
LOC_Os01g27750
Os.7136.2.S1_x_at--690--2211Chr01:15818951..15818975 (25 bp)
ACAAGCCATGGGTCAGTTTGAGCAT
LOC_Os01g27750
Os.7136.2.S1_x_at--175--7511Chr01:15818983..15819115 (25 bp)
GTGGTATTGAAGCTCCTGAAAGCCT
LOC_Os01g27750
Target Sequence 
AGTGGGCTACAATACTGACTACATTGGAGCAATTTCTGCTATTGAGGATGGCATAGGAGGCCCAGGATCAAAGGATGCTG
CCATCTCACCTTTGGCTGGCAGGCTTGTTGTTGTTGTAGGTGCTGGTGGAGCTGGTAAGGCAATTGCTTATGGGGCAAAG
GAGAAGGGTGCAAGAGTTGTAGTAGCAAATCGTACCTACGAAAAAGCAGTAAGTCTTGCTGCTGCAGTGGGTGGTCATGC
CCTGAGATTAGCCGAGCTTGAAACTTTCAGGCCTGAAGAAGGGATGATCCTTGCTAATGCGACATCATTGGGAATGTACC
CCAATGTGGACGGCACCCCTATCCCAAAGAAAGCATTAAGCTTCTATGATGTTGTATTTGATGCGGTATATGCCCCGAAA
GTTACCCGGCTTCTACGAGAAGCAGAAGAATGTGGGATTAAAGTTGTCAGCGGTGTAGAGATGTTTGTCAGACAAGCCAT
GGGTCAGTTTGAGCATTTCACAGGTGGTATTGAAGCTCCTGAAAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7136.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis