Browse Element(s) Details


OsAffx.10711.1.S1_at

Description gb:NM_183659.1
DB_XREF= gi:34894445
GEN=OSJNBa0025P13.18
TID=OsAffx.10711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0025P13.18 (OSJNBa0025P13.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g277901/11retrotransposon protein, putative, unclassified
LOC_Os05g305601/11retrotransposon protein, putative, unclassified
LOC_Os06g426101/11Cytochrome P450 89A2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27750Os.7136.1.S1_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed
LOC_Os01g27750Os.7136.2.S1_x_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed
LOC_Os01g27760OsAffx.23423.1.S1_at11/111+15821755..15823146hypothetical protein
LOC_Os01g27770OsAffx.11231.1.S1_at11/111+15829852..15832481dehydroquinate dehydratase, putative
LOC_Os01g27780Os.7136.2.S1_x_at1/111+15835107..15838538Shikimate/quinate 5-dehydrogenase family protein, expressed
LOC_Os01g27790OsAffx.10711.1.S1_x_at3/111+15841920..15850258retrotransposon protein, putative, unclassified
LOC_Os01g27790OsAffx.10711.1.S1_at1/111+15841920..15850258retrotransposon protein, putative, unclassified
LOC_Os01g27790Os.27544.1.A1_at1/111+15841920..15850258retrotransposon protein, putative, unclassified
LOC_Os01g27800Os.28943.1.S1_x_at4/111+15850930..15854472retrotransposon protein, putative, unclassified
LOC_Os01g27820NANA1+15861067..15862593hypothetical protein
LOC_Os01g27834NANA1+15867056..15867403hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10711.1.S1_at--105--7391Chr11:25990480..25990840 (25 bp)
ATGTCAGTCCCGATCCACCAGAACA
NONE
OsAffx.10711.1.S1_at--671--7811Chr01:10891684..10892178 (25 bp)
GGTCTCCCGGCGCAGTGCTCTCTAC
NONE
OsAffx.10711.1.S1_at--866--9091Chr01:10892169..10892193 (25 bp)
TGCTCTCTACTTCGTGATGTTGACG
NONE
OsAffx.10711.1.S1_at--110--9511Chr01:10892172..10892196 (25 bp)
TCTCTACTTCGTGATGTTGACGTTT
NONE
OsAffx.10711.1.S1_at--929--9871Chr01:10892176..10892200 (25 bp)
TACTTCGTGATGTTGACGTTTTCGA
NONE
OsAffx.10711.1.S1_at--983--7391Chr01:10892182..10892206 (25 bp)
GTGATGTTGACGTTTTCGATGTCTC
NONE
OsAffx.10711.1.S1_at--176--6291Chr01:10892184..10892208 (25 bp)
GATGTTGACGTTTTCGATGTCTCTT
NONE
OsAffx.10711.1.S1_at--599--8811Chr01:10892186..10892210 (25 bp)
TGTTGACGTTTTCGATGTCTCTTCA
NONE
OsAffx.10711.1.S1_at--509--10751Chr01:10892188..10892212 (25 bp)
TTGACGTTTTCGATGTCTCTTCACG
NONE
OsAffx.10711.1.S1_at--530--1891Chr01:10892191..10892215 (25 bp)
ACGTTTTCGATGTCTCTTCACGCTC
NONE
OsAffx.10711.1.S1_at--440--10391Chr01:10892194..10892218 (25 bp)
TTTTCGATGTCTCTTCACGCTCTCG
NONE
Target Sequence 
ATGTCAGTCCCGATCCACCAGAACACAGGAGTAGGGTGTTACGCTTCTCAGCGGCCCGAACCTGTCTACGTCGCCCGTGT
CTTGTGCATTTCCTCTCTCGCTGACGTTCCTCAGATCGAGGGCGAAGAAACTCACTTAGCGCCCCCGGCCGAACCGGCAA
AGGGGGGCCTGCGCGGTCTCCCGGCGCAGTGCTCTCTACTTCGTGATGTTGACGTTTTCGATGTCTCTTCACGCTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis