Browse Element(s) Details


OsAffx.23423.1.S1_at

Description tigr:9629.m02655
TID=OsAffx.23423.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2776011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27740Os.22658.1.S1_at11/111+15801150..15805188DnaJ domain containing protein, expressed
LOC_Os01g27750Os.7136.1.S1_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed
LOC_Os01g27750Os.7136.2.S1_x_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed
LOC_Os01g27760OsAffx.23423.1.S1_at11/111+15821755..15823146hypothetical protein
LOC_Os01g27770OsAffx.11231.1.S1_at11/111+15829852..15832481dehydroquinate dehydratase, putative
LOC_Os01g27780Os.7136.2.S1_x_at1/111+15835107..15838538Shikimate/quinate 5-dehydrogenase family protein, expressed
LOC_Os01g27790OsAffx.10711.1.S1_x_at3/111+15841920..15850258retrotransposon protein, putative, unclassified
LOC_Os01g27790OsAffx.10711.1.S1_at1/111+15841920..15850258retrotransposon protein, putative, unclassified
LOC_Os01g27790Os.27544.1.A1_at1/111+15841920..15850258retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23423.1.S1_at--735--10631Chr01:15822547..15822571 (25 bp)
TTCCGGCGGCAACCCCAATTTGGCA
LOC_Os01g27760
OsAffx.23423.1.S1_at--1113--3091Chr01:15822563..15822587 (25 bp)
AATTTGGCAACTCCCGAGTCTCCGA
LOC_Os01g27760
OsAffx.23423.1.S1_at--496--6091Chr01:15822578..15822602 (25 bp)
GAGTCTCCGACACAATGCCAAATTG
LOC_Os01g27760
OsAffx.23423.1.S1_at--865--9671Chr01:15822753..15822777 (25 bp)
TCACCATCAGTACTCTGGCACTCTG
LOC_Os01g27760
OsAffx.23423.1.S1_at--1021--9171Chr01:15822782..15822806 (25 bp)
TGCCGATCTCGCTCGCGCGAGCATT
LOC_Os01g27760
OsAffx.23423.1.S1_at--461--5931Chr01:15822800..15822824 (25 bp)
GAGCATTCACGTCGTCGCTACCGAA
LOC_Os01g27760
OsAffx.23423.1.S1_at--1116--3331Chr01:15822807..15822831 (25 bp)
CACGTCGTCGCTACCGAAGGAGGAG
LOC_Os01g27760
OsAffx.23423.1.S1_at--736--8311Chr01:15822941..15822965 (25 bp)
GGCTCGACTTCATCGGCAGCAAGTT
LOC_Os01g27760
OsAffx.23423.1.S1_at--238--9451Chr01:15822953..15822977 (25 bp)
TCGGCAGCAAGTTCCGCCCGCGGGA
LOC_Os01g27760
OsAffx.23423.1.S1_at--81--9531Chr01:15823056..15823080 (25 bp)
TCTTGCTACCCTACCGTACGTCGTG
LOC_Os01g27760
OsAffx.23423.1.S1_at--790--9931Chr01:15823072..15823096 (25 bp)
TACGTCGTGCTCTCTCAGGCAGCTA
LOC_Os01g27760
Target Sequence 
TTCCGGCGGCAACCCCAATTTGGCAACTCCCGAGTCTCCGACACAATGCCAAATTGCTTAATTTCCCTTGCCCGGCCGGC
TGCTCCCACACTCCCACACTCCCACCTCACCAACCCACGCCACCCTGCTACGCCCACCGCCACAGCCGCCACACCCAAAC
CCAACACACCTCCCGACCCGACCCGCCCCGCCCCCCACCTCACACTTCACCATCAGTACTCTGGCACTCTGCCACTGCCG
ATCTCGCTCGCGCGAGCATTCACGTCGTCGCTACCGAAGGAGGAGGAGGAGGAGATGACGCTCCTGTGCGTGCCGCTGGT
GGCCCGCACGGTGGAGGCGATGCGGGCCGACGCGGCCGCGGCCGCTGCCGCCGGCGCCGACCTCGTCGAGATCCGGCTCG
ACTTCATCGGCAGCAAGTTCCGCCCGCGGGAGGATCTCCCGCGCCTGCTCCGCGGCTGCCCGCTCCCCGCCATCGTCACC
TACAGGTCAGAACCCCGGCCCTCTCCCGCTCTTGCTACCCTACCGTACGTCGTGCTCTCTCAGGCAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis