Browse Element(s) Details


OsAffx.10711.1.S1_x_at

Description gb:NM_183659.1
DB_XREF= gi:34894445
GEN=OSJNBa0025P13.18
TID=OsAffx.10711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0025P13.18 (OSJNBa0025P13.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g426103/11Cytochrome P450 89A2, putative
LOC_Os01g277903/11retrotransposon protein, putative, unclassified
LOC_Os04g470593/11Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g102503/11retrotransposon protein, putative, unclassified
LOC_Os04g501723/11retrotransposon protein, putative, unclassified
LOC_Os05g305602/11retrotransposon protein, putative, unclassified
LOC_Os02g520901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42570NANA6+25598123..25601217transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42580Os.47463.1.S1_x_at4/116+25606592..25608177transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42580Os.14491.2.S1_x_at3/116+25606592..25608177transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42590NANA6+25610071..25615096retrotransposon protein, putative, unclassified
LOC_Os06g42600NANA6+25616067..25618954retrotransposon protein, putative, unclassified
LOC_Os06g42610Os.27544.1.A1_at4/116+25619943..25621318Cytochrome P450 89A2, putative
LOC_Os06g42610OsAffx.10711.1.S1_x_at3/116+25619943..25621318Cytochrome P450 89A2, putative
LOC_Os06g42610OsAffx.30695.3.S1_x_at1/116+25619943..25621318Cytochrome P450 89A2, putative
LOC_Os06g42610OsAffx.10711.1.S1_at1/116+25619943..25621318Cytochrome P450 89A2, putative
LOC_Os06g42610OsAffx.30695.4.S1_x_at1/116+25619943..25621318Cytochrome P450 89A2, putative
LOC_Os06g42610OsAffx.30695.2.S1_x_at1/116+25619943..25621318Cytochrome P450 89A2, putative
LOC_Os06g42620OsAffx.15895.1.S1_at11/116+25627959..25628810hypothetical protein
LOC_Os06g42630OsAffx.15896.1.S1_at10/116+25632146..25635385B3 DNA binding domain containing protein
LOC_Os06g42640Os.49730.1.S1_at11/116+25640469..25644229transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g42650NANA6+25644545..25647548hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009813biological_processflavonoid biosynthesis
GO:0009957biological_processepidermal cell fate specification
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10711.1.S1_x_at--150--981116Chr12:12569246..12569270 (25 bp)
TAACTCCTGGAGTTGGTATGTCAGT
NONE
OsAffx.10711.1.S1_x_at--226--605162Chr12:26495096..26495115 (20 bp)
GAGTTGGTATGTCAGTCCCGATCCA
NONE
OsAffx.10711.1.S1_x_at--104--7391Chr11:25990480..25990840 (25 bp)
ATGTCAGTCCCGATCCACCAGAACA
NONE
OsAffx.10711.1.S1_x_at--572--95921Chr11:18957892..18957916 (25 bp)
TCTTGTGCATTTCCTCTCTCGCTGA
NONE
OsAffx.10711.1.S1_x_at--240--385114Chr11:25990916..25990940 (25 bp)
CTGACGTTCCTCAGATCGAGGGCGA
NONE
OsAffx.10711.1.S1_x_at--403--9332Chr01:10891625..10891649 (25 bp)
TCGAGGGCGAAGAAACTCACTTAGC
NONE
OsAffx.10711.1.S1_x_at--495--8391Chr01:10892162..10892186 (25 bp)
GGCGCAGTGCTCTCTACTTCGTGAT
NONE
OsAffx.10711.1.S1_x_at--949--4811Chr01:10892170..10892194 (25 bp)
GCTCTCTACTTCGTGATGTTGACGT
NONE
OsAffx.10711.1.S1_x_at--175--6291Chr01:10892184..10892208 (25 bp)
GATGTTGACGTTTTCGATGTCTCTT
NONE
OsAffx.10711.1.S1_x_at--508--10751Chr01:10892188..10892212 (25 bp)
TTGACGTTTTCGATGTCTCTTCACG
NONE
OsAffx.10711.1.S1_x_at--439--10391Chr01:10892194..10892218 (25 bp)
TTTTCGATGTCTCTTCACGCTCTCG
NONE
Target Sequence 
TAACTCCTGGAGTTGGTATGTCAGTCCCGATCCACCAGAACACAGGAGTAGGGTGTTACGCTTCTCAGCGGCCCGAACCT
GTCTACGTCGCCCGTGTCTTGTGCATTTCCTCTCTCGCTGACGTTCCTCAGATCGAGGGCGAAGAAACTCACTTAGCGCC
CCCGGCCGAACCGGCAAAGGGGGGCCTGCGCGGTCTCCCGGCGCAGTGCTCTCTACTTCGTGATGTTGACGTTTTCGATG
TCTCTTCACGCTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10711.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis