Browse Element(s) Details

Os.49730.1.S1_at

Description

gb:AK101148.1
DB_XREF= gi:32986357
TID=Os.49730.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49730 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033026P12, full insert sequence.
FL= gb:AK060787.1 gb:AK101148.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g42640	11/11	transposon protein, putative, Mutator sub-class, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g42600	NA	NA	6	+	25616067..25618954	retrotransposon protein, putative, unclassified
LOC_Os06g42610	Os.27544.1.A1_at	4/11	6	+	25619943..25621318	Cytochrome P450 89A2, putative
LOC_Os06g42610	OsAffx.10711.1.S1_x_at	3/11	6	+	25619943..25621318	Cytochrome P450 89A2, putative
LOC_Os06g42610	OsAffx.30695.3.S1_x_at	1/11	6	+	25619943..25621318	Cytochrome P450 89A2, putative
LOC_Os06g42610	OsAffx.10711.1.S1_at	1/11	6	+	25619943..25621318	Cytochrome P450 89A2, putative
LOC_Os06g42610	OsAffx.30695.4.S1_x_at	1/11	6	+	25619943..25621318	Cytochrome P450 89A2, putative
LOC_Os06g42610	OsAffx.30695.2.S1_x_at	1/11	6	+	25619943..25621318	Cytochrome P450 89A2, putative
LOC_Os06g42620	OsAffx.15895.1.S1_at	11/11	6	+	25627959..25628810	hypothetical protein
LOC_Os06g42630	OsAffx.15896.1.S1_at	10/11	6	+	25632146..25635385	B3 DNA binding domain containing protein
LOC_Os06g42640	Os.49730.1.S1_at	11/11	6	+	25640469..25644229	transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g42650	NA	NA	6	+	25644545..25647548	hypothetical protein
LOC_Os06g42660	Os.55280.1.S1_at	11/11	6	+	25654527..25655227	expressed protein
LOC_Os06g42670	Os.47463.1.S1_x_at	5/11	6	+	25663338..25664677	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42670	Os.14491.2.S1_x_at	3/11	6	+	25663338..25664677	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42680	Os.3434.1.S1_a_at	11/11	6	+	25669037..25670898	Phytosulfokines 1 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49730.1.S1_at--331--911	1	Chr06:25641037..25641061 (25 bp)	TGCTGCCTCCTGCTATATTAAGTGA	LOC_Os06g42640
Os.49730.1.S1_at--619--503	1	Chr06:25640936..25640960 (25 bp)	GCAGACCCACGCATCGCAATTAAAA	LOC_Os06g42640
Os.49730.1.S1_at--452--273	1	Chr06:25640869..25640893 (25 bp)	AAGCAACCTGCAAAGTTCCTCTGAG	LOC_Os06g42640
Os.49730.1.S1_at--706--889	1	Chr06:25640848..25640872 (25 bp)	TGAGCACATAGTCTACCCATGGGTT	LOC_Os06g42640
Os.49730.1.S1_at--1087--767	1	Chr06:25640828..25640852 (25 bp)	GGGTTCAGTTCTCCTATGTACATTT	LOC_Os06g42640
Os.49730.1.S1_at--1073--601	1	Chr06:25640798..25640822 (25 bp)	GAGAGTTGCTCTTGTTTGCTGTAAT	LOC_Os06g42640
Os.49730.1.S1_at--416--255	1	Chr06:25640751..25640775 (25 bp)	AACTCGGTACATGCATCAGTCATTG	LOC_Os06g42640
Os.49730.1.S1_at--141--685	1	Chr06:25640625..25640649 (25 bp)	GTTTGCTGTTATGTAATGCTGTCCA	LOC_Os06g42640
Os.49730.1.S1_at--429--727	1	Chr06:25640605..25640629 (25 bp)	GTCCAATTTGATCTGGTTTCCCGTT	LOC_Os06g42640
Os.49730.1.S1_at--674--931	1	Chr06:25640587..25640611 (25 bp)	TCCCGTTCTAGCTATTGTGTGCCAA	LOC_Os06g42640
Os.49730.1.S1_at--253--885	1	Chr06:25640560..25640584 (25 bp)	TGATCATCTCAACTCTCAGGCAAGG	LOC_Os06g42640

Target Sequence

TGCTGCCTCCTGCTATATTAAGTGATCAATCTCAAAGTCCAGTAACACATGCAACCCCAATAAGAACCCGACGACGGGTT
GGCAGGCCAAAGGAGAAGCCGGCAGACCCACGCATCGCAATTAAAAGGGCAGTGCGGTGCAGCAGGTGCCAGGGTTATGG
CCACAATAAAGCAACCTGCAAAGTTCCTCTGAGCACATAGTCTACCCATGGGTTCAGTTCTCCTATGTACATTTAGGTGG
AGAGTTGCTCTTGTTTGCTGTAATACGAGTGATGCTATTTCTTTATAACTCGGTACATGCATCAGTCATTGATTCTAGCT
CTAAATTGCTTTGTATTTGCTTGCTTTGTTAGGCTAACATATTTGGTCGTAAAATCGCACATTGTAATGGACGCAATAGA
GAGACTTGGGAGGTTTGCTGTTATGTAATGCTGTCCAATTTGATCTGGTTTCCCGTTCTAGCTATTGTGTGCCAATCTGA
TCATCTCAACTCTCAGGCAAGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis