Browse Element(s) Details


Os.55280.1.S1_at

Description gb:AK107791.1
DB_XREF= gi:32993000
TID=Os.55280.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55280 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-D05, full insert sequence.
FL= gb:AK107791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4266011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42630OsAffx.15896.1.S1_at10/116+25632146..25635385B3 DNA binding domain containing protein
LOC_Os06g42640Os.49730.1.S1_at11/116+25640469..25644229transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g42650NANA6+25644545..25647548hypothetical protein
LOC_Os06g42660Os.55280.1.S1_at11/116+25654527..25655227expressed protein
LOC_Os06g42670Os.47463.1.S1_x_at5/116+25663338..25664677transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42670Os.14491.2.S1_x_at3/116+25663338..25664677transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42680Os.3434.1.S1_a_at11/116+25669037..25670898Phytosulfokines 1 precursor, putative, expressed
LOC_Os06g42690NANA6+25675969..25676493bZIP transcription factor family protein, expressed
LOC_Os06g42700OsAffx.15898.1.S1_s_at11/116+25679949..25681202Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g42700Os.15524.1.S1_at10/116+25679949..25681202Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55280.1.S1_at--537--6711Chr06:25654710..25654734 (25 bp)
GTTCGCGGTGATGATGGGCCTCATC
LOC_Os06g42660
Os.55280.1.S1_at--235--9131Chr06:25654751..25654775 (25 bp)
TGCTGGTCTGCACGCGCCGCAAGAA
LOC_Os06g42660
Os.55280.1.S1_at--221--7091Chr06:25654816..25654840 (25 bp)
GTCAAGGTGCTGGTGCCGCTCGACC
LOC_Os06g42660
Os.55280.1.S1_at--291--7611Chr06:25654966..25654990 (25 bp)
GGGAAACCGCCCGTGCTGCAAGTTG
LOC_Os06g42660
Os.55280.1.S1_at--362--9011Chr06:25654982..25655006 (25 bp)
TGCAAGTTGCGCGTGGGACCAATTT
LOC_Os06g42660
Os.55280.1.S1_at--215--4151Chr06:25654991..25655015 (25 bp)
CGCGTGGGACCAATTTTGTTCGTGA
LOC_Os06g42660
Os.55280.1.S1_at--483--8731Chr06:25655049..25655073 (25 bp)
TGTAATCATCGGCTGCTAGCTCTAG
LOC_Os06g42660
Os.55280.1.S1_at--1108--3111Chr06:25655101..25655125 (25 bp)
AATTTGGGTCGAATTCTTGGCCAGC
LOC_Os06g42660
Os.55280.1.S1_at--248--1551Chr06:25655123..25655147 (25 bp)
AGCTTCGGCTTTGGAATCTGTAAAT
LOC_Os06g42660
Os.55280.1.S1_at--136--2711Chr06:25655187..25655211 (25 bp)
AAGCTTTGTGCTTCCAATAAATGCA
LOC_Os06g42660
Os.55280.1.S1_at--1031--331Chr06:25655203..25655227 (25 bp)
ATAAATGCATCAAGGCTTTTCTTCC
LOC_Os06g42660
Target Sequence 
GTTCGCGGTGATGATGGGCCTCATCGCGGTGGCGCTGCTCGTGCTGGTCTGCACGCGCCGCAAGAACCACGGCGACGCGG
GGTCGTCGGCGTCGGCGGCGGCGTCGGTCAAGGTGCTGGTGCCGCTCGACCGGGAGCCCAAGGTGGTCGTCATCATGGCC
GGCGACACCGCGCCGTCCTTCCTCGCCAGCGCCAAGCCGCTCTCCTCCTTCGTCCTCCCCCCGCCGCCGCCACCGGCCGC
CGCCGGCGAGCCGTAGGGGAAACCGCCCGTGCTGCAAGTTGCGCGTGGGACCAATTTTGTTCGTGAGATTTGCTACTAGG
AATTAATTTTTTCCACCCCTGTAATCATCGGCTGCTAGCTCTAGCACACATGGAGAGGAGACGAGAGGTCAAATTTGGGT
CGAATTCTTGGCCAGCTTCGGCTTTGGAATCTGTAAATTCAAGTCTTTTGGTTTGTTGTTGCAACTGACAAAAGGCAAAG
CTTTGTGCTTCCAATAAATGCATCAAGGCTTTTCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis