Browse Element(s) Details


Os.3434.1.S1_a_at

Description gb:AB020505.1
DB_XREF= gi:6361343
GEN=OsPSK
TID=Os.3434.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3434 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for phytosulfokine-alpha precursor, complete cds.
PROD=phytosulfokine-alpha precursor
FL= gb:AB020505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4268011/11Phytosulfokines 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42640Os.49730.1.S1_at11/116+25640469..25644229transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g42650NANA6+25644545..25647548hypothetical protein
LOC_Os06g42660Os.55280.1.S1_at11/116+25654527..25655227expressed protein
LOC_Os06g42670Os.47463.1.S1_x_at5/116+25663338..25664677transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42670Os.14491.2.S1_x_at3/116+25663338..25664677transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42680Os.3434.1.S1_a_at11/116+25669037..25670898Phytosulfokines 1 precursor, putative, expressed
LOC_Os06g42690NANA6+25675969..25676493bZIP transcription factor family protein, expressed
LOC_Os06g42700OsAffx.15898.1.S1_s_at11/116+25679949..25681202Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g42700Os.15524.1.S1_at10/116+25679949..25681202Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g42710OsAffx.2625.1.S1_at6/116+25683526..25687067transposon protein, putative, Mutator sub-class
LOC_Os06g42720Os.9832.1.S1_at11/116+25689382..25692908amino acid transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3434.1.S1_a_at--745--5371Chr06:25670704..25670728 (25 bp)
GAAGAACAGCTAGGGCACTCTGCCT
LOC_Os06g42680
Os.3434.1.S1_a_at--941--10071Chr06:25670656..25670680 (25 bp)
TAGGTCAAGATACCCATTCCAGGAA
LOC_Os06g42680
Os.3434.1.S1_a_at--99--91Chr06:25670641..25670665 (25 bp)
ATTCCAGGAAGCTCCTGTTGCAGGA
LOC_Os06g42680
Os.3434.1.S1_a_at--622--9191Chr06:25669354..25669378 (25 bp)
TCCACACGGATTATATCTACACCCA
LOC_Os06g42680
Os.3434.1.S1_a_at--681--2031Chr06:25669282..25669306 (25 bp)
ACTAGTAGCTTATACCTTCTGCGCG
LOC_Os06g42680
Os.3434.1.S1_a_at--695--9491Chr06:25669265..25669289 (25 bp)
TCTGCGCGTCTTTTGTTCGTTTGGA
LOC_Os06g42680
Os.3434.1.S1_a_at--237--3111Chr06:25669202..25669226 (25 bp)
AATTAAATCCCAGGCAAATCCCACT
LOC_Os06g42680
Os.3434.1.S1_a_at--1152--7111Chr06:25669128..25669152 (25 bp)
GTCATACACAACTACTCCTGGTAAC
LOC_Os06g42680
Os.3434.1.S1_a_at--268--9811Chr06:25669107..25669131 (25 bp)
TAACTACTCCTATCTTCGATGAATT
LOC_Os06g42680
Os.3434.1.S1_a_at--1107--5211Chr06:25669087..25669111 (25 bp)
GAATTTTCTGGTTTTGCCAGACGTG
LOC_Os06g42680
Os.3434.1.S1_a_at--478--10671Chr06:25669074..25669098 (25 bp)
TTGCCAGACGTGACAATAGTCCAGT
LOC_Os06g42680
Target Sequence 
GAAGAACAGCTAGGGCACTCTGCCTCCTATGCCTTGCTCTCCTCCTGCTAGGTCAAGATACCCATTCCAGGAAGCTCCTG
TTGCAGGAGAAGCACAGCCATGGCGTCGGCAACGGCACAACCACCACCCAGGAACCAAGCAGAGAGAATGGAGGAAGTAC
AGGTTCCAATAACAATGGGCAGCTGCAGTTTGATTCAGCCAAATGGGAAGAATTCCACACGGATTATATCTACACCCAAG
ATGTCAAAAAGCCATAATGGCTGTTCATTTATGATTTGAACTAGTACTAGTAGCTTATACCTTCTGCGCGTCTTTTGTTC
GTTTGGAGAGGGGNATTTTCTTGGGATTTAGCATATGAACTAATTAAATTAAATCCCAGGCAAATCCCACTCAGCCCATT
TTGNGCAGAAGTTGNTCAGTGTNGCACTGTATAATTATTTAGTCATACACAACTACTCCTGGTAACTACTCCTATCTTCG
ATGAATTTTCTGGTTTTGCCAGACGTGACAATAGTCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3434.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis