Browse Element(s) Details


OsAffx.2625.1.S1_at

Description tigr:9630.m01458
TID=OsAffx.2625.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1557011/11hypothetical protein
LOC_Os06g427106/11transposon protein, putative, Mutator sub-class
LOC_Os05g055204/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15550Os.28095.1.S1_at11/112+8726613..8730643Spermidine synthase 1, putative, expressed
LOC_Os02g15550Os.21831.1.S1_at1/112+8726613..8730643Spermidine synthase 1, putative, expressed
LOC_Os02g15560Os.9016.1.S1_x_at11/112+8732272..8737877transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g15560OsAffx.26273.1.S1_at6/112+8732272..8737877transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g15570OsAffx.2625.1.S1_at11/112+8741014..8742325hypothetical protein
LOC_Os02g15580Os.5666.1.S1_at11/112+8747017..8754114Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os02g15580Os.5666.2.S1_at11/112+8747017..8754114Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os02g15594Os.27158.1.S1_at11/112+8760003..8766248protein phosphatase 2C, putative, expressed
LOC_Os02g15610Os.47970.1.S1_at11/112+8766791..876927840S ribosomal protein S15a, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2625.1.S1_at--639--5573Chr06:25684292..25684316 (25 bp)
GAAAGTGCTCCACATATTTCTTTGT
LOC_Os06g42710
OsAffx.2625.1.S1_at--798--232Chr06:25684305..25684329 (25 bp)
ATATTTCTTTGTGTCCTCCTGCTGA
LOC_Os06g42710
OsAffx.2625.1.S1_at--882--7832Chr06:25684354..25684378 (25 bp)
GGTAGAGCCACCTATTTCAAAGTCT
LOC_Os06g42710
OsAffx.2625.1.S1_at--682--8871Chr02:8741446..8741470 (25 bp)
TGAGGAGGGCTCATATTCCGAAACT
LOC_Os02g15570
OsAffx.2625.1.S1_at--92--1573Chr06:25684487..25684511 (25 bp)
AGCTATGACACTGACTTGGCTGCAT
LOC_Os06g42710
OsAffx.2625.1.S1_at--249--5692Chr06:25684499..25684523 (25 bp)
GACTTGGCTGCATCATCTGATTCTG
LOC_Os06g42710
OsAffx.2625.1.S1_at--342--733Chr06:25684530..25684554 (25 bp)
ATGATTCTGAATGCTCTGACTCCGA
LOC_Os06g42710
OsAffx.2625.1.S1_at--801--8911Chr02:8741335..8741359 (25 bp)
TGACTCCGACAACAGCTATGAACCT
LOC_Os02g15570
OsAffx.2625.1.S1_at--403--6951Chr02:8741223..8741247 (25 bp)
GTAGATGTGCTGTTTCGCGATGTTG
LOC_Os02g15570
OsAffx.2625.1.S1_at--379--5031Chr02:8741184..8741208 (25 bp)
GCAGTAACCTGCCATGCAATCTTAA
LOC_Os02g15570
OsAffx.2625.1.S1_at--483--8112Chr05:2721933..2721957 (25 bp)
GGACGTTTTTTGCATCCACCAGCAA
LOC_Os05g05520
Target Sequence 
GAAAGTGCTCCACATATTTCTTTGTGTCCTCCTGCTGATCTAACCCTACCCACAGCTAAAGTGGTAGAGCCACCTATTTC
AAAGTCTAAGCATACCAAAAGAGCCACAAGGAAAAGGGTCAGTGATGAGACAGTCGGAGTTGATGAGGAGGGCTCATATT
CCGAAACTGAATCATTGGTGGCACTAAGTGATAGTAGCTATGACACTGACTTGGCTGCATCATCTGATTCTGATTGCTAT
GATTCTGAATGCTCTGACTCCGACAACAGCTATGAACCTGATGATGAAATTGTTGATGATGATGATGATGATGATTGTGA
TGATATTCATGATTTTTCATATGATGTTAATGATCCATGCATTGATGTAGATGTGCTGTTTCGCGATGTTGATGAGTGCA
AATCAGCAGTAACCTGCCATGCAATCTTAAATGATTATGCTTTCCAAACTGTTAAAAAAAACAAGGATAGGTTTAGGGCA
AAGTGTAGGCGAGCAGAGGAGGGTTGCAAGTGGACGTTTTTTGCATCCACCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis