Browse Element(s) Details


Os.47970.1.S1_at

Description gb:AK063840.1
DB_XREF= gi:32973858
TID=Os.47970.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47970 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-B12, full insert sequence.
FL= gb:AK063840.1 gb:AK121591.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1561011/1140S ribosomal protein S15a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15570OsAffx.2625.1.S1_at11/112+8741014..8742325hypothetical protein
LOC_Os02g15580Os.5666.1.S1_at11/112+8747017..8754114Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os02g15580Os.5666.2.S1_at11/112+8747017..8754114Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os02g15594Os.27158.1.S1_at11/112+8760003..8766248protein phosphatase 2C, putative, expressed
LOC_Os02g15610Os.47970.1.S1_at11/112+8766791..876927840S ribosomal protein S15a, putative, expressed
LOC_Os02g15620OsAffx.2626.1.S1_at11/112+8779113..8781621AT-rich element binding factor 3, putative
LOC_Os02g15630Os.2741.4.S1_x_at11/112+8783919..8792096retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g15630OsAffx.2627.1.S1_at9/112+8783919..8792096retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005830cellular_componentcytosolic ribosome (sensu Eukaryota)
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47970.1.S1_at--717--911Chr02:8768064..8768088 (25 bp)
AGGCTCTTACTTATAGGCAGGATAT
LOC_Os02g15610
Os.47970.1.S1_at--315--1351Chr02:8768014..8768038 (25 bp)
AGAGTTCGGATGCTTCCAACACGGC
LOC_Os02g15610
Os.47970.1.S1_at--869--8712Chr02:8767230..8767254 (25 bp)
TGTCGTGATCACAACTCCAAATGGT
LOC_Os02g15610
Os.47970.1.S1_at--266--10791Chr02:8767130..8767154 (25 bp)
TTGTTTTCCTGTCTTGTTATGTCTG
LOC_Os02g15610
Os.47970.1.S1_at--1134--8791Chr02:8767101..8767125 (25 bp)
TGTTCTCCTGTGTGTTATCACTGAA
LOC_Os02g15610
Os.47970.1.S1_at--856--10711Chr02:8767043..8767067 (25 bp)
TTGCTTTTGTTCATGGCCAACAGGA
LOC_Os02g15610
Os.47970.1.S1_at--886--10611Chr02:8766944..8766968 (25 bp)
TTCGTTGGACTGTTCTTTCTGTAGA
LOC_Os02g15610
Os.47970.1.S1_at--656--6071Chr02:8766900..8766924 (25 bp)
GAGTTACTCCTACATAGCTATCCTC
LOC_Os02g15610
Os.47970.1.S1_at--727--291Chr02:8766887..8766911 (25 bp)
ATAGCTATCCTCTCGACCGGAGAAG
LOC_Os02g15610
Os.47970.1.S1_at--326--6911Chr02:8766838..8766862 (25 bp)
GTATCTGATACACAAGCTTCTCTGA
LOC_Os02g15610
Os.47970.1.S1_at--930--1551Chr02:8766824..8766848 (25 bp)
AGCTTCTCTGAAATCTTGCCTGTAC
LOC_Os02g15610
Target Sequence 
AGGCTCTTACTTATAGGCAGGATATTAGAGCCAAGGAAATAGAACAATACAGAGTTCGGATGCTTCCAACACGGCAGTGG
GGCTATGTCGTGATCACAACTCCAAATGGTGTACTGGATCATGAGGAAGCAATTAAGCAGAATGTGGGCGGGCAAGTGCT
TGGTTATTTTCATTGNGAAGTAACATTGTTTTCCTGTCTTGTTATGTCTGGCCTTGTTCTCCTGTGTGTTATCACTGAAC
TCTTTTTTTTTTTTTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGCCAACAGGAAATGCAATAACGCATAAAAGAT
ACAGCTCAGAGCACTAGAAAATGCCAATTGTTAAAGAAAAAGATTGTAATCCTTCGTTGGACTGTTCTTTCTGTAGACTA
TTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATATGGTCCAGAGTATGACAGTTTGT
ATCTGATACACAAGCTTCTCTGAAATCTTGCCTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis