Browse Element(s) Details


OsAffx.2627.1.S1_at

Description tigr:9630.m01464
TID=OsAffx.2627.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g156309/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15594Os.27158.1.S1_at11/112+8760003..8766248protein phosphatase 2C, putative, expressed
LOC_Os02g15610Os.47970.1.S1_at11/112+8766791..876927840S ribosomal protein S15a, putative, expressed
LOC_Os02g15620OsAffx.2626.1.S1_at11/112+8779113..8781621AT-rich element binding factor 3, putative
LOC_Os02g15630Os.2741.4.S1_x_at11/112+8783919..8792096retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g15630OsAffx.2627.1.S1_at9/112+8783919..8792096retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g15640Os.21043.1.S1_at8/112+8801323..8805349AT-rich element binding factor 3, putative, expressed
LOC_Os02g15649NANA2+8808564..8808993NA
LOC_Os02g15660OsAffx.24269.1.S1_at11/112+8809965..8820959tetratricopeptide repeat, putative, expressed
LOC_Os02g15660Os.17360.1.A1_at10/112+8809965..8820959tetratricopeptide repeat, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2627.1.S1_at--669--3911Chr02:8783682..8783706 (25 bp)
CGGCCTTTCTGTTCACTGCGGCGGG
NONE
OsAffx.2627.1.S1_at--888--7711Chr02:8784011..8784035 (25 bp)
GGTGGCCGCGGCACTCTGCATCGGG
LOC_Os02g15630
OsAffx.2627.1.S1_at--452--7511Chr02:8784042..8784066 (25 bp)
GTGGAGCTGTTCTTGCCAGGTCCGT
LOC_Os02g15630
OsAffx.2627.1.S1_at--729--1611Chr02:8784046..8784070 (25 bp)
AGCTGTTCTTGCCAGGTCCGTGAAA
LOC_Os02g15630
OsAffx.2627.1.S1_at--933--8791Chr02:8784049..8784073 (25 bp)
TGTTCTTGCCAGGTCCGTGAAAGAA
LOC_Os02g15630
OsAffx.2627.1.S1_at--885--3591Chr02:8784053..8784077 (25 bp)
CTTGCCAGGTCCGTGAAAGAAGAGG
LOC_Os02g15630
OsAffx.2627.1.S1_at--41--7971Chr02:8784081..8784105 (25 bp)
TGGGACCCCTGGCACTTGCGGTGGA
LOC_Os02g15630
OsAffx.2627.1.S1_at--881--10711Chr02:8784096..8784120 (25 bp)
TTGCGGTGGAGAACCTCGCCCCAGA
LOC_Os02g15630
OsAffx.2627.1.S1_at--210--1451Chr02:8784105..8784129 (25 bp)
AGAACCTCGCCCCAGAGCTCTGGAT
LOC_Os02g15630
OsAffx.2627.1.S1_at--323--3432Chr04:32893353..32893381 (25 bp)
CAGAGCTCTGGATTGCGAACGCGGC
NONE
OsAffx.2627.1.S1_at--611--7751NONE
GGTGATCGACACAATACTCTTTCTT
NONE
Target Sequence 
CGGCCTTTCTGTTCACTGCGGCGGGGACGACAGTGGGGAGCGGCGGTCGGGACAACAGCGGTGGGGAGCGGGCGGTGGTG
GCGGTGGGGACGAGGCGGTGGGGAACGGTTGCGGCGACGTCCGTCGCCGGTGGCCGCGGCACTCTGCATCGGGGGAGCGG
TGGAGCTGTTCTTGCCAGGTCCGTGAAAGAAGAGGAGGTGGGACCCCTGGCACTTGCGGTGGAGAACCTCGCCCCAGAGC
TCTGGATTGCGAACGCGGCGGCGCCCATCTGCGCCATGACGGGGGTGATCGACACAATACTCTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis