Browse Element(s) Details


Os.17360.1.A1_at

Description gb:AK060468.1
DB_XREF= gi:32970486
TID=Os.17360.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.17360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013103F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-D08, full insert sequence.
FL= gb:AK067390.1 gb:AK060468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1566010/11tetratricopeptide repeat, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15630Os.2741.4.S1_x_at11/112+8783919..8792096retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g15630OsAffx.2627.1.S1_at9/112+8783919..8792096retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g15640Os.21043.1.S1_at8/112+8801323..8805349AT-rich element binding factor 3, putative, expressed
LOC_Os02g15649NANA2+8808564..8808993NA
LOC_Os02g15660OsAffx.24269.1.S1_at11/112+8809965..8820959tetratricopeptide repeat, putative, expressed
LOC_Os02g15660Os.17360.1.A1_at10/112+8809965..8820959tetratricopeptide repeat, putative, expressed
LOC_Os02g15670NANA2+8824992..8825378expressed protein
LOC_Os02g15680OsAffx.2628.1.S1_at9/112+8829117..8829631hypothetical protein
LOC_Os02g15690Os.27198.1.S1_at11/112+8834266..8837490glycoside hydrolase family 28 protein, putative, expressed
LOC_Os02g15700Os.49774.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15700Os.54037.1.S1_s_at11/112+8842946..8844247expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17360.1.A1_at--648--6471Chr02:8810594..8810618 (25 bp)
GATAAACCTTCTCAGTACACACAGA
LOC_Os02g15660
Os.17360.1.A1_at--844--691NONE
ATGAGACTTTTTTCTTCTGGACAGC
NONE
Os.17360.1.A1_at--849--2371Chr02:8810514..8810538 (25 bp)
AAACCGGCACACTGCTATTTTGTGT
LOC_Os02g15660
Os.17360.1.A1_at--1093--1471Chr02:8810487..8810511 (25 bp)
AGAATTAGTTCCTTTCCTGATCCAT
LOC_Os02g15660
Os.17360.1.A1_at--24--6971Chr02:8810452..8810476 (25 bp)
GTAGCATCTACACGTGCTTCTGCAG
LOC_Os02g15660
Os.17360.1.A1_at--405--3651Chr02:8810436..8810460 (25 bp)
CTTCTGCAGTTCCAATGGCCTTGAA
LOC_Os02g15660
Os.17360.1.A1_at--1053--6011Chr02:8810372..8810396 (25 bp)
GAGAGTGATCGATGAGCCCTTTTTT
LOC_Os02g15660
Os.17360.1.A1_at--659--271Chr02:8810271..8810295 (25 bp)
ATAGTTCATAGTCTTCCCTTTTTGC
LOC_Os02g15660
Os.17360.1.A1_at--1017--8091Chr02:8810214..8810238 (25 bp)
GGACCATCTGTCGACATAACACATG
LOC_Os02g15660
Os.17360.1.A1_at--841--5571Chr02:8810128..8810152 (25 bp)
GAAAGTGGTGCCTATTTGGCCTCTT
LOC_Os02g15660
Os.17360.1.A1_at--542--3691Chr02:8810117..8810141 (25 bp)
CTATTTGGCCTCTTGCTTGATGTGA
LOC_Os02g15660
Target Sequence 
GATAAACCTTCTCAGTACACACAGAAAATTTTACCTCTTTTACAGATGAGACTTTTTTCTTCTGGACAGCATACAAATGC
AAAACCGGCACACTGCTATTTTGTGTAGAGAATTAGTTCCTTTCCTGATCCATCTCATGGTATGTAGCATCTACACGTGC
TTCTGCAGTTCCAATGGCCTTGAAAGGTTATGCAATGGCAGAGAACTTTGAAGATCTCTTCCTGAGAGTGATCGATGAGC
CCTTTTTTTCAGCTTGCTTTGCATTTGCTCCAAAGAAACTTGGGAAGAGCAAGCACACGAGAGATTGGTTAGCGCATATA
TACCATAGTTCATAGTCTTCCCTTTTTGCCTATCATTTTGTTCAACTTGTTATTATGTACTGGACCATCTGTCGACATAA
CACATGTGAACTTATTTTTACTCTGAATTTTGATATATTAGAATTGTTGAACCATGTAAATTGTAAAGAAAGTGGTGCCT
ATTTGGCCTCTTGCTTGATGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17360.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis