Browse Element(s) Details


OsAffx.2628.1.S1_at

Description tigr:9630.m01469
TID=OsAffx.2628.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g156809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15640Os.21043.1.S1_at8/112+8801323..8805349AT-rich element binding factor 3, putative, expressed
LOC_Os02g15649NANA2+8808564..8808993NA
LOC_Os02g15660OsAffx.24269.1.S1_at11/112+8809965..8820959tetratricopeptide repeat, putative, expressed
LOC_Os02g15660Os.17360.1.A1_at10/112+8809965..8820959tetratricopeptide repeat, putative, expressed
LOC_Os02g15670NANA2+8824992..8825378expressed protein
LOC_Os02g15680OsAffx.2628.1.S1_at9/112+8829117..8829631hypothetical protein
LOC_Os02g15690Os.27198.1.S1_at11/112+8834266..8837490glycoside hydrolase family 28 protein, putative, expressed
LOC_Os02g15700Os.49774.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15700Os.54037.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15704Os.53480.1.S1_x_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.56035.1.S1_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.27237.3.A1_x_at1/112+8850621..8851895expressed protein
LOC_Os02g15710OsAffx.2629.1.S1_at11/112+8854325..8854983Chemocyanin precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2628.1.S1_at--652--3631Chr02:8829279..8829593 (25 bp)
CTTGCTGGGGTCCAAAAGTGGCATT
LOC_Os02g15680
OsAffx.2628.1.S1_at--542--7531Chr02:8829262..8829286 (25 bp)
GTGGCATTGTTTGTCCACATAGACA
LOC_Os02g15680
OsAffx.2628.1.S1_at--716--10791Chr02:8829256..8829280 (25 bp)
TTGTTTGTCCACATAGACAGATTGC
LOC_Os02g15680
OsAffx.2628.1.S1_at--574--3571Chr02:8829245..8829269 (25 bp)
CATAGACAGATTGCATGTGTGGAGA
LOC_Os02g15680
OsAffx.2628.1.S1_at--914--3433Chr06:11972047..11972143 (25 bp)
CAGATTGCATGTGTGGAGAAGAAAA
NONE
OsAffx.2628.1.S1_at--292--5851Chr02:8829206..8829230 (25 bp)
GACCATGTTTTTGTGGAGTCCTCGC
LOC_Os02g15680
OsAffx.2628.1.S1_at--830--3511Chr02:8829203..8829227 (25 bp)
CATGTTTTTGTGGAGTCCTCGCATC
LOC_Os02g15680
OsAffx.2628.1.S1_at--1031--6811Chr02:8829200..8829224 (25 bp)
GTTTTTGTGGAGTCCTCGCATCCTC
LOC_Os02g15680
OsAffx.2628.1.S1_at--602--8551Chr02:8829193..8829217 (25 bp)
TGGAGTCCTCGCATCCTCTGTTGGT
LOC_Os02g15680
OsAffx.2628.1.S1_at--1038--3531NONE
CATCCTCTGTTGGTACCTGATGAGG
NONE
OsAffx.2628.1.S1_at--936--3771NONE
CTCTGTTGGTACCTGATGAGGACAT
NONE
Target Sequence 
CTTGCTGGGGTCCAAAAGTGGCATTGTTTGTCCACATAGACAGATTGCATGTGTGGAGAAGAAAAGGGATGGGGACCATG
TTTTTGTGGAGTCCTCGCATCCTCTGTTGGTACCTGATGAGGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis