Browse Element(s) Details


Os.53480.1.S1_x_at

Description gb:AK072883.1
DB_XREF= gi:32982906
TID=Os.53480.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53480 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149L05, full insert sequence.
FL= gb:AK072883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g157047/11expressed protein
LOC_Os10g321505/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15680OsAffx.2628.1.S1_at9/112+8829117..8829631hypothetical protein
LOC_Os02g15690Os.27198.1.S1_at11/112+8834266..8837490glycoside hydrolase family 28 protein, putative, expressed
LOC_Os02g15700Os.49774.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15700Os.54037.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15704Os.53480.1.S1_x_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.56035.1.S1_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.27237.3.A1_x_at1/112+8850621..8851895expressed protein
LOC_Os02g15710OsAffx.2629.1.S1_at11/112+8854325..8854983Chemocyanin precursor, putative
LOC_Os02g15720OsAffx.4864.1.S1_at2/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.18048.1.S1_at1/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.30486.1.S1_at1/112+8856564..8862454hypothetical protein
LOC_Os02g15730OsAffx.24270.1.S1_x_at11/112+8867082..8867538Chemocyanin precursor, putative, expressed
LOC_Os02g15730OsAffx.24270.1.S1_at11/112+8867082..8867538Chemocyanin precursor, putative, expressed
LOC_Os02g15740Os.16163.1.S1_at8/112+8869106..8871518expressed protein
LOC_Os02g15750Os.16733.1.S1_at11/112+8873039..8876439expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53480.1.S1_x_at--147--7191Chr03:24837025..24837049 (25 bp)
GTCGTCGCCGACTGTTAGAAATTAA
NONE
Os.53480.1.S1_x_at--197--10733Chr04:5692394..5692418 (25 bp)
TTGCATGGCCTGGAGAGCTAGCTAT
NONE
Os.53480.1.S1_x_at--278--1578Chr04:5692413..5692435 (23 bp)
AGCTATATGTACGTGGGTGCTGCAT
NONE
Os.53480.1.S1_x_at--722--1558Chr04:5692521..5692545 (25 bp)
AGCTTAGTTAGTTAGCCATGCATAA
NONE
Os.53480.1.S1_x_at--468--8836Chr03:24837249..24837273 (25 bp)
TGATTAGCCGAGTCTTGCACAAGAT
NONE
Os.53480.1.S1_x_at--685--1191Chr03:24837278..24837302 (25 bp)
AGTAGGATGTGGTCAGTTTGCATGC
NONE
Os.53480.1.S1_x_at--853--1894Chr03:24837333..24837357 (25 bp)
ACGTCGGCGAGGACTCAGTACTTGT
NONE
Os.53480.1.S1_x_at--1106--9437Chr03:24837347..24837371 (25 bp)
TCAGTACTTGTGAAGTTGCGGCCAA
NONE
Os.53480.1.S1_x_at--620--7472Chr03:24837394..24837418 (25 bp)
GTGTGGCTCGAGAAGCGGAACAACC
NONE
Os.53480.1.S1_x_at--199--8176Chr03:24837410..24837434 (25 bp)
GGAACAACCAGCTTCGTGTGTGTAT
NONE
Os.53480.1.S1_x_at--50--3116Chr03:24837448..24837472 (25 bp)
AATAGCTGCTCATTGTAATCATTTA
NONE
Target Sequence 
GTCGTCGCCGACTGTTAGAAATTAATCTTGTTGTTTCTTAATTTCAGCATGTTTATCTATATGCATGTGTGTATTGCATG
GCCTGGAGAGCTAGCTATATGTACGTGGGTGCTGCATGGCTTAGTGAGTAGTGGTTGGCAGTGAGTAGTGAGCCAATAAA
AAGCCAGGAGATGAGAGCACATGTATGTAGCTTAGTTAGTTAGCCATGCATAATTGTGGGCTAGTGATTAGCCGAGTCTT
GCACAAGATTATGAGTAGGATGTGGTCAGTTTGCATGCATGCAGGTTAGTTGGGTGGTGCAAGCAACGACGTCGGCGAGG
ACTCAGTACTTGTGAAGTTGCGGCCAAGTAAACAGGGCGTGGGCGTCGTGTGTGGCTCGAGAAGCGGAACAACCAGCTTC
GTGTGTGTATGTGCTGTGTTATAAATAGCTGCTCATTGTAATCATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53480.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis