Browse Element(s) Details


Os.16163.1.S1_at

Description gb:AK103494.1
DB_XREF= gi:32988703
TID=Os.16163.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16163 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033130P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130P11, full insert sequence.
FL= gb:AK103494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g157408/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15700Os.49774.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15700Os.54037.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15704Os.53480.1.S1_x_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.56035.1.S1_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.27237.3.A1_x_at1/112+8850621..8851895expressed protein
LOC_Os02g15710OsAffx.2629.1.S1_at11/112+8854325..8854983Chemocyanin precursor, putative
LOC_Os02g15720OsAffx.4864.1.S1_at2/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.18048.1.S1_at1/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.30486.1.S1_at1/112+8856564..8862454hypothetical protein
LOC_Os02g15730OsAffx.24270.1.S1_x_at11/112+8867082..8867538Chemocyanin precursor, putative, expressed
LOC_Os02g15730OsAffx.24270.1.S1_at11/112+8867082..8867538Chemocyanin precursor, putative, expressed
LOC_Os02g15740Os.16163.1.S1_at8/112+8869106..8871518expressed protein
LOC_Os02g15750Os.16733.1.S1_at11/112+8873039..8876439expressed protein
LOC_Os02g15760OsAffx.2630.1.S1_at11/112+8879440..8882658Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g15760OsAffx.2630.1.S1_x_at10/112+8879440..8882658Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g15770NANA2+8894493..8895107hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16163.1.S1_at--198--3051Chr02:8869801..8869825 (25 bp)
AATCGACATCCCGTTCAGAGCTACT
LOC_Os02g15740
Os.16163.1.S1_at--590--2891Chr02:8869479..8869503 (25 bp)
AAGGTGCCCCTCATTCTTGAGGAAG
LOC_Os02g15740
Os.16163.1.S1_at--332--4851Chr02:8869353..8869377 (25 bp)
GCTAGCTTAGCAGCTGCACTGCACT
LOC_Os02g15740
Os.16163.1.S1_at--985--2891Chr02:8869288..8869312 (25 bp)
AAGGTGCCATGCATTACTGCCATTG
LOC_Os02g15740
Os.16163.1.S1_at--32--10631Chr02:8869251..8869275 (25 bp)
TTCGTATTTGCAGCTGTCACGTACT
LOC_Os02g15740
Os.16163.1.S1_at--1157--7091Chr02:8869236..8869260 (25 bp)
GTCACGTACTGTAGACTGTCTGAAA
LOC_Os02g15740
Os.16163.1.S1_at--831--2511Chr02:8869213..8869237 (25 bp)
AACTTAGATGTGTGCCTGTGAATTT
LOC_Os02g15740
Os.16163.1.S1_at--718--9791Chr02:8869163..8869187 (25 bp)
TAAGCTTTTTGCTCTCCTGCATATA
LOC_Os02g15740
Os.16163.1.S1_at--702--3771NONE
CTCTCCTGCATATATTTCCCAAATA
NONE
Os.16163.1.S1_at--1116--391NONE
ATCAGCATCATCACCTATATATCCA
NONE
Os.16163.1.S1_at--412--251NONE
ATATCCAATGAAGGTTTTCCCTGTC
NONE
Target Sequence 
AATCGACATCCCGTTCAGAGCTACTGGGGAGGAGCTGGGGATGGTTCTGCGTCTCCGGCAGCCTGCTGTTCGTCGCGGCG
GGGCTGCTGAACCTCCTCAAGGTGTTCAAGATGCANNAGATGGACGGNNGGGGACTGGAGAAGCTGCGCGGCGGCGCGCA
GGANCGGCTGAACAGGGAGAGGGNAGGGCAAGGTGCCCCTCATTCTTGAGGAAGGCCAGAGGAGGACCCCGGCTCNCGGT
GTCGGGCCAGGTCCCGCCGCCTCCGGCTGGGTCCTACAAGGAGNCCGTCGTCAGCGGCGCGCCGGCTGGCTAGCTAGCTA
GCTTAGCAGCTGCACTGCACTGCACACAGTGTAACGATGAGAATAAGGGAGGTGACAAAACAAGGTGCCATGCATTACTG
CCATTGCCACNCTGTAATTTCGTATTTGCAGCTGTCACGTACTGTAGACTGTCTGAAACTTAGATGTGTGCCTGTGAATT
TATGGTCGATATATTACATGNTNNTAAGCTTTTTGCTCTCCTGCATATATTTCCCAAATAAAATCAGCATCATCACCTAT
ATATCCAATGAAGGTTTTCCCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis