Browse Element(s) Details


Os.54037.1.S1_s_at

Description gb:AK101438.1
DB_XREF= gi:32986647
TID=Os.54037.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54037 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033039D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033039D20, full insert sequence.
FL= gb:AK101438.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1570011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15660OsAffx.24269.1.S1_at11/112+8809965..8820959tetratricopeptide repeat, putative, expressed
LOC_Os02g15660Os.17360.1.A1_at10/112+8809965..8820959tetratricopeptide repeat, putative, expressed
LOC_Os02g15670NANA2+8824992..8825378expressed protein
LOC_Os02g15680OsAffx.2628.1.S1_at9/112+8829117..8829631hypothetical protein
LOC_Os02g15690Os.27198.1.S1_at11/112+8834266..8837490glycoside hydrolase family 28 protein, putative, expressed
LOC_Os02g15700Os.49774.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15700Os.54037.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15704Os.53480.1.S1_x_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.56035.1.S1_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.27237.3.A1_x_at1/112+8850621..8851895expressed protein
LOC_Os02g15710OsAffx.2629.1.S1_at11/112+8854325..8854983Chemocyanin precursor, putative
LOC_Os02g15720OsAffx.4864.1.S1_at2/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.18048.1.S1_at1/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.30486.1.S1_at1/112+8856564..8862454hypothetical protein
LOC_Os02g15730OsAffx.24270.1.S1_x_at11/112+8867082..8867538Chemocyanin precursor, putative, expressed
LOC_Os02g15730OsAffx.24270.1.S1_at11/112+8867082..8867538Chemocyanin precursor, putative, expressed
LOC_Os02g15740Os.16163.1.S1_at8/112+8869106..8871518expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54037.1.S1_s_at--724--691Chr02:8843197..8843221 (25 bp)
ATGAGTTGGCTCAAGGACTTTGTGA
LOC_Os02g15700
Os.54037.1.S1_s_at--72--4831Chr02:8843189..8843213 (25 bp)
GCTCAAGGACTTTGTGAACCGCTTC
LOC_Os02g15700
Os.54037.1.S1_s_at--11--8691Chr02:8843177..8843201 (25 bp)
TGTGAACCGCTTCTAGGTCTCTCGA
LOC_Os02g15700
Os.54037.1.S1_s_at--987--10071Chr02:8843164..8843188 (25 bp)
TAGGTCTCTCGATCGATCAGCCTAG
LOC_Os02g15700
Os.54037.1.S1_s_at--904--391Chr02:8843149..8843173 (25 bp)
ATCAGCCTAGCTTGCCGCTGCTTCT
LOC_Os02g15700
Os.54037.1.S1_s_at--610--10591Chr02:8843122..8843146 (25 bp)
TTCTCCATCGTCTGCTTGTGTTGTT
LOC_Os02g15700
Os.54037.1.S1_s_at--894--3571Chr02:8843076..8843100 (25 bp)
CATATGGCTGCTGTGTATTCTACTT
LOC_Os02g15700
Os.54037.1.S1_s_at--866--6851Chr02:8843062..8843086 (25 bp)
GTATTCTACTTTTCTACGGCCGTAT
LOC_Os02g15700
Os.54037.1.S1_s_at--752--10531Chr02:8843051..8843075 (25 bp)
TTCTACGGCCGTATATGTATTTCGT
LOC_Os02g15700
Os.54037.1.S1_s_at--906--731Chr02:8843037..8843061 (25 bp)
ATGTATTTCGTATACCGTATTTGTG
LOC_Os02g15700
Os.54037.1.S1_s_at--411--10171Chr02:8843027..8843051 (25 bp)
TATACCGTATTTGTGTTGTGGTACT
LOC_Os02g15700
Target Sequence 
ATGAGTTGGCTCAAGGACTTTGTGAACCGCTTCTAGGTCTCTCGATCGATCAGCCTAGCTTGCCGCTGCTTCTTCTTCTC
CATCGTCTGCTTGTGTTGTTGTGTCGAGTTCATTCATGATTCATATGGCTGCTGTGTATTCTACTTTTCTACGGCCGTAT
ATGTATTTCGTATACCGTATTTGTGTTGTGGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54037.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis