Browse Element(s) Details


Os.21043.1.S1_at

Description gb:AK059303.1
DB_XREF= gi:32969321
TID=Os.21043.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-307-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-F10, full insert sequence.
FL= gb:AK059303.1 gb:AK104581.1 gb:AK064805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g156408/11AT-rich element binding factor 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15620OsAffx.2626.1.S1_at11/112+8779113..8781621AT-rich element binding factor 3, putative
LOC_Os02g15630Os.2741.4.S1_x_at11/112+8783919..8792096retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g15630OsAffx.2627.1.S1_at9/112+8783919..8792096retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g15640Os.21043.1.S1_at8/112+8801323..8805349AT-rich element binding factor 3, putative, expressed
LOC_Os02g15649NANA2+8808564..8808993NA
LOC_Os02g15660OsAffx.24269.1.S1_at11/112+8809965..8820959tetratricopeptide repeat, putative, expressed
LOC_Os02g15660Os.17360.1.A1_at10/112+8809965..8820959tetratricopeptide repeat, putative, expressed
LOC_Os02g15670NANA2+8824992..8825378expressed protein
LOC_Os02g15680OsAffx.2628.1.S1_at9/112+8829117..8829631hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21043.1.S1_at--1017--6291Chr02:8804961..8804985 (25 bp)
GATGAGACATGCTACTTCGTGGAGG
LOC_Os02g15640
Os.21043.1.S1_at--408--7511Chr02:8804979..8805003 (25 bp)
GTGGAGGCCCTGCTGAAATGCAACC
LOC_Os02g15640
Os.21043.1.S1_at--687--1331Chr02:8805017..8805041 (25 bp)
AGAGGTTTCTGAACGCCTGGTTGTC
LOC_Os02g15640
Os.21043.1.S1_at--631--3791Chr02:8805060..8805084 (25 bp)
CTCGACCGGTGATTGTTGCCAAGAT
LOC_Os02g15640
Os.21043.1.S1_at--247--5051Chr02:8805126..8805150 (25 bp)
GCAGAGTTGCTATTCTCCAATGGAG
LOC_Os02g15640
Os.21043.1.S1_at--1073--3831Chr02:8805216..8805240 (25 bp)
CTGCTACTGCTGTGCTATGTTCAAA
LOC_Os02g15640
Os.21043.1.S1_at--670--2451Chr02:8805258..8805282 (25 bp)
AAAATATTGTGCCTCCTCTTTGAGC
LOC_Os02g15640
Os.21043.1.S1_at--265--10774Chr12:21382690..21382714 (25 bp)
TTGAGCCTCTGTTGCTGTTCTTTAC
NONE
Os.21043.1.S1_at--264--6191NONE
GGGCCTAAATGCCAGACGGTTTCGA
NONE
Os.21043.1.S1_at--399--8291Chr02:8805410..8805434 (25 bp)
GGCTTGGAGGGCTCTCTGTAATTAG
NONE
Os.21043.1.S1_at--703--4291NONE
CCTTTAGTTCAATTGGCACCTTAGT
NONE
Target Sequence 
GATGAGACATGCTACTTCGTGGAGGCCCTGCTGAAATGCAACCTGAAATCTCTTGCAGAGGTTTCTGAACGCCTGGTTGT
CAAGGACCAAACCNGAGCCCCTCGACCGGTGATTGTTGCCAAGATTCCAAGAGCTATTTTGTGTTGCAAATGCTTAATTA
GATTGTGCAGAGTTGCTATTCTCCAATGGAGCCCTTAGGTTCTTTTTCTTCTTGTTGTTGTTGAATGGTTCATGAGAGAC
TTGTGAGAGAGTGCTGCTGCTACTGCTGTGCTATGTTCAAACCAAAAGAGAAGAAAAAAAAATATTGTGCCTCCTCTTTG
AGCCTCTGTTGCTGTTCTTTACCNCCCTAGTATGTCACAAGGGCCTAAAAAAAATATTGTGTGTTTCGTTAGTGTTGAAG
TACAGGGATTATTAGAACCATATAAGGGCCTAAATGCCAGACGGTTTCGAGGCTTGGAGGGCTCTCTGTAATTAGTTTTG
CCTTTAGTTCAATTGGCACCTTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis