Browse Element(s) Details


OsAffx.2626.1.S1_at

Description tigr:9630.m01463
TID=OsAffx.2626.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1562011/11AT-rich element binding factor 3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15580Os.5666.1.S1_at11/112+8747017..8754114Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os02g15580Os.5666.2.S1_at11/112+8747017..8754114Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os02g15594Os.27158.1.S1_at11/112+8760003..8766248protein phosphatase 2C, putative, expressed
LOC_Os02g15610Os.47970.1.S1_at11/112+8766791..876927840S ribosomal protein S15a, putative, expressed
LOC_Os02g15620OsAffx.2626.1.S1_at11/112+8779113..8781621AT-rich element binding factor 3, putative
LOC_Os02g15630Os.2741.4.S1_x_at11/112+8783919..8792096retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g15630OsAffx.2627.1.S1_at9/112+8783919..8792096retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g15640Os.21043.1.S1_at8/112+8801323..8805349AT-rich element binding factor 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2626.1.S1_at--191--911Chr02:8779644..8779668 (25 bp)
AGGGAGTACTAGTCTCGCCGTTGGT
LOC_Os02g15620
OsAffx.2626.1.S1_at--160--7891Chr02:8779680..8779704 (25 bp)
GGTTGATTTCAAGTCGGGCTTCCCT
LOC_Os02g15620
OsAffx.2626.1.S1_at--1148--7571Chr02:8779695..8779719 (25 bp)
GGGCTTCCCTGCCAAGAGCAGTGTA
LOC_Os02g15620
OsAffx.2626.1.S1_at--1042--5571Chr02:8779720..8779744 (25 bp)
GAAAGGCTTGAGATCCTTGACGACA
LOC_Os02g15620
OsAffx.2626.1.S1_at--436--2231Chr02:8779742..8779766 (25 bp)
ACAAGGAGCACGTCTTCGGTGTCAG
LOC_Os02g15620
OsAffx.2626.1.S1_at--521--1891Chr02:8779751..8779775 (25 bp)
ACGTCTTCGGTGTCAGGATCATTGG
LOC_Os02g15620
OsAffx.2626.1.S1_at--215--151Chr02:8781401..8781425 (25 bp)
ATTACTCGTCAGTGTTGACGGCCAA
LOC_Os02g15620
OsAffx.2626.1.S1_at--352--1871Chr02:8781506..8781530 (25 bp)
ACGAGACGCGCCACTTCGTCGAGTT
LOC_Os02g15620
OsAffx.2626.1.S1_at--658--9411Chr02:8781521..8781545 (25 bp)
TCGTCGAGTTCCTCATCCGGTGCAA
LOC_Os02g15620
OsAffx.2626.1.S1_at--455--1031Chr02:8781550..8781574 (25 bp)
AGGTCACTCGCGATGGTTTCTCAAC
LOC_Os02g15620
OsAffx.2626.1.S1_at--239--831Chr02:8781562..8781586 (25 bp)
ATGGTTTCTCAACGTCTCCTGCTTG
LOC_Os02g15620
Target Sequence 
AGGGAGTACTAGTCTCGCCGTTGGTTGTGTGCGAGAGGTTGATTTCAAGTCGGGCTTCCCTGCCAAGAGCAGTGTAGAAA
GGCTTGAGATCCTTGACGACAAGGAGCACGTCTTCGGTGTCAGGATCATTGGAGGTGACCATAGGCTCAAGAATTACTCG
TCAGTGTTGACGGCCAAGCCCGAGGCCATCGACGGCGAGCCGGCGACGCTGGTGTCGGAGTCCTTCGTCGTCGACGTCCC
CGAAGGGAACACCGCCGACGAGACGCGCCACTTCGTCGAGTTCCTCATCCGGTGCAACCTCAGGTCACTCGCGATGGTTT
CTCAACGTCTCCTGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis