Browse Element(s) Details


Os.21831.1.S1_at

Description gb:AK068706.1
DB_XREF= gi:32978723
TID=Os.21831.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.21831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158O16, full insert sequence.
FL= gb:AK068706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0254011/11Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os02g155501/11Spermidine synthase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02500Os.49670.1.S1_at11/112+890263..894233Remorin, C-terminal region family protein, expressed
LOC_Os02g02510Os.8844.1.S1_at11/112+894656..895626RNA polymerase Rpb4 family protein, expressed
LOC_Os02g02520Os.19594.1.A1_at11/112+896074..900372expressed protein
LOC_Os02g02530Os.28063.1.S1_at11/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02530Os.7138.1.A1_x_at2/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02540Os.21831.1.S1_at11/112+918797..923968Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os02g02550Os.2370.2.S1_at10/112+924473..926622peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g02560Os.2370.1.S1_at11/112+926031..929928UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os02g02570Os.51729.1.S1_at11/112+930260..934270autophagy protein Apg5 family, putative, expressed
LOC_Os02g02580Os.52758.1.S1_at11/112+934591..937786expressed protein
LOC_Os02g02590Os.52649.1.A1_at11/112+938375..941300pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0006874biological_processcalcium ion homeostasis
GO:0006883biological_processsodium ion homeostasis
GO:0008295biological_processspermidine biosynthesis
GO:0009416biological_processresponse to light stimulus
GO:0030007biological_processpotassium ion homeostasis
GO:0005737cellular_componentcytoplasm
GO:0004766molecular_functionspermidine synthase activity
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
GO:0016768molecular_functionspermine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21831.1.S1_at--934--6691Chr02:923386..923410 (25 bp)
GTTCCTCATTTGTGGTATCGCATGT
LOC_Os02g02540
Os.21831.1.S1_at--348--6911Chr02:923400..923424 (25 bp)
GTATCGCATGTGTCATCGCGCTGCT
LOC_Os02g02540
Os.21831.1.S1_at--1134--9011Chr02:923552..923576 (25 bp)
TGCAACTGCAGAAATTTCATCTCAT
LOC_Os02g02540
Os.21831.1.S1_at--1017--9571Chr02:923578..923602 (25 bp)
TCTTGATCACAAGGAGCCACCAAAG
LOC_Os02g02540
Os.21831.1.S1_at--822--4511Chr02:923626..923650 (25 bp)
GCCGACAACGCCATTGAGCAACTTT
LOC_Os02g02540
Os.21831.1.S1_at--121--5951Chr02:923641..923665 (25 bp)
GAGCAACTTTACTGCCCTTGAAATA
LOC_Os02g02540
Os.21831.1.S1_at--1128--3471Chr02:923686..923710 (25 bp)
CAGGAATGGTAGTGTCGTTGACATA
LOC_Os02g02540
Os.21831.1.S1_at--748--6491Chr02:923760..923784 (25 bp)
GATATGCCATCTTTCGGTCAATCTC
LOC_Os02g02540
Os.21831.1.S1_at--607--6211Chr02:923815..923839 (25 bp)
GAGGCTGCATAAGATGCTATCTGTA
LOC_Os02g02540
Os.21831.1.S1_at--1131--2231Chr02:923867..923891 (25 bp)
AAATTCATTTGAGGCCAGTTTGGCA
LOC_Os02g02540
Os.21831.1.S1_at--907--112Chr02:923915..923939 (25 bp)
ATTCTTGTCCTTGATGGTATTTTGA
LOC_Os02g02540
Target Sequence 
GTTCCTCATTTGTGGTATCGCATGTGTCATCGCGCTGCTCATCTACTTTTTCANNNCNNNNNGNNNNTNNNTCANGNATN
AANCTNNNNNNNANNCNNNNNNNCNTCCNGNCNGNTCAACAACTCTTCCAGACGAACGAACACCCCCAAAGAACGGACAA
GAGAAATGCAACTGCAGAAATTTCATCTCATTTCTTGATCACAAGGAGCCACCAAAGAAGAAGCNGNCCTTGAGTTTGAC
GCCGACAACGCCATTGAGCAACTTTACTGCCCTTGAAATAGAAGGACCTGTGAGGACAGTCAGGAATGGTAGTGTCGTTG
ACATATAGAACTANTGTGTGTAAAAAGCTGAGATGTTATATATTTTGGATCTGAGATATGCCATCTTTCGGTCAATCTCC
TCAATTTTAGTTGAGAGAAAATATAATCAGAGGCTGCATAAGATGCTATCTGTAGATTTCAAGCAAATCCGGTGATGGGA
AAAATTCATTTGAGGCCAGTTTGGCAACTNAAAAACTGTATAGAAAGNTATTCTTGTCCTTGATGGTATTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis