Browse Element(s) Details


Os.49670.1.S1_at

Description gb:AK102604.1
DB_XREF= gi:32987813
TID=Os.49670.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49670 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033098O09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098O09, full insert sequence.
FL= gb:AK102604.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0250011/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02460Os.53376.1.S1_at11/112+866007..869292transposon protein, putative, unclassified, expressed
LOC_Os02g02470Os.2246.1.S1_at11/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02470OsAffx.1157.1.S1_at2/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02480Os.17893.1.S1_at11/112+875904..878615Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02490Os.56364.1.S1_x_at11/112+884324..887679Leucine Rich Repeat family protein, expressed
LOC_Os02g02500Os.49670.1.S1_at11/112+890263..894233Remorin, C-terminal region family protein, expressed
LOC_Os02g02510Os.8844.1.S1_at11/112+894656..895626RNA polymerase Rpb4 family protein, expressed
LOC_Os02g02520Os.19594.1.A1_at11/112+896074..900372expressed protein
LOC_Os02g02530Os.28063.1.S1_at11/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02530Os.7138.1.A1_x_at2/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02540Os.21831.1.S1_at11/112+918797..923968Glutamate receptor 3.3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49670.1.S1_at--438--2311Chr02:892754..892778 (25 bp)
AAAGGAGTGCCCATGGACCAATCTA
LOC_Os02g02500
Os.49670.1.S1_at--398--4691Chr02:893947..893971 (25 bp)
GCGGAGCAGGCAGACCACATCAGGA
LOC_Os02g02500
Os.49670.1.S1_at--484--1711Chr02:893960..893984 (25 bp)
ACCACATCAGGAGAACCGGCAGGAT
LOC_Os02g02500
Os.49670.1.S1_at--1149--991Chr02:893980..894004 (25 bp)
AGGATGCCGTCCTCCATTGGCTGCT
LOC_Os02g02500
Os.49670.1.S1_at--392--3611Chr02:893994..894018 (25 bp)
CATTGGCTGCTGGAACTGGTGCTCG
LOC_Os02g02500
Os.49670.1.S1_at--994--1951Chr02:894008..894032 (25 bp)
ACTGGTGCTCGTAGTAGCGTAGCTA
LOC_Os02g02500
Os.49670.1.S1_at--392--2731Chr02:894051..894075 (25 bp)
AAGCAAAAAGCTCTCCTCACTATGT
LOC_Os02g02500
Os.49670.1.S1_at--832--5411Chr02:894088..894112 (25 bp)
GAAGCGCCATCATCTGTTTTTACCG
LOC_Os02g02500
Os.49670.1.S1_at--282--3871Chr02:894101..894125 (25 bp)
CTGTTTTTACCGTGATCTTGTAGAA
LOC_Os02g02500
Os.49670.1.S1_at--835--1451Chr02:894164..894188 (25 bp)
AGAAGACGAGTCACTTGTAAGTAAC
LOC_Os02g02500
Os.49670.1.S1_at--157--9011Chr02:894208..894232 (25 bp)
TGCAAGCTTCTTGCCTTTTTCTGTG
LOC_Os02g02500
Target Sequence 
AAAGGAGTGCCCATGGACCAATCTACACAGAAGGTAACAGANATTCGTGCAGCAGCGTGGGAGGAGGCANAGAAGGCTAA
ATATTTAGCAAGATTTAAACGAGAAGAGATTAAGATCCAAGCATGGGAAGATCATCAGAGAGCAAAAATCGAAGCTGAAA
TGAGAAAAATTGAGGTCGACGTGGAAAGGATGCGAGCCCGTGCGCANGACAAGCTGATGAGCCAGCNTCGCATCNGCGAG
ACACACTGCCGACGAGAAGCGGGCNGCGGCGGAGCTGAAACGGAGCCGTGCGNCTGCAAAGACGGCGGAGCAGGCAGACC
ACATCAGGAGAACCGGCAGGATGCCGTCCTCCATTGGCTGCTGGAACTGGTGCTCGTAGTAGCGTAGCTAANGCTCAAGC
AACTGAAGCAAGCAAAAAGCTCTCCTCACTATGTCTCGCAAGACTTNGAAGCGCCATCATCTGTTTTTACCGTGATCTTG
TAGAATATTGNCTTTTGATTGGNTTCAGTAGATATAAGTCAGAAGAAGACGAGTCACTTGTAAGTAACTATGGAGCAGTA
TATAAGATGCAAGCTTCTTGCCTTTTTCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis