Browse Element(s) Details


Os.8844.1.S1_at

Description gb:AK121401.1
DB_XREF= gi:37991024
TID=Os.8844.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131N03, full insert sequence.
FL= gb:AK121401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0251011/11RNA polymerase Rpb4 family protein, expressed
LOC_Os03g219141/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02470Os.2246.1.S1_at11/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02470OsAffx.1157.1.S1_at2/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02480Os.17893.1.S1_at11/112+875904..878615Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02490Os.56364.1.S1_x_at11/112+884324..887679Leucine Rich Repeat family protein, expressed
LOC_Os02g02500Os.49670.1.S1_at11/112+890263..894233Remorin, C-terminal region family protein, expressed
LOC_Os02g02510Os.8844.1.S1_at11/112+894656..895626RNA polymerase Rpb4 family protein, expressed
LOC_Os02g02520Os.19594.1.A1_at11/112+896074..900372expressed protein
LOC_Os02g02530Os.28063.1.S1_at11/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02530Os.7138.1.A1_x_at2/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02540Os.21831.1.S1_at11/112+918797..923968Glutamate receptor 3.3 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006366biological_processtranscription from RNA polymerase II promoter
GO:0005665cellular_componentDNA-directed RNA polymerase II, core complex
GO:0003899molecular_functionDNA-directed RNA polymerase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8844.1.S1_at--855--4671Chr02:895232..895256 (25 bp)
GCGGTTCAGCCGGTACAAGAACCCG
LOC_Os02g02510
Os.8844.1.S1_at--604--8891Chr02:895191..895215 (25 bp)
TGAGGGAGACGCTGAGCCGCTACGG
LOC_Os02g02510
Os.8844.1.S1_at--1051--5831Chr02:895024..895048 (25 bp)
GACCTCTCCCTTATCAAGAAGTTCG
LOC_Os02g02510
Os.8844.1.S1_at--546--6711Chr02:895004..895028 (25 bp)
GTTCGAGTAGTAGGACTGTAGCTTA
LOC_Os02g02510
Os.8844.1.S1_at--23--6971Chr02:894987..895011 (25 bp)
GTAGCTTATCAGATTTGCTGGTGAA
LOC_Os02g02510
Os.8844.1.S1_at--648--8971Chr02:894966..894990 (25 bp)
TGAACTGTCTAATTAATATCTGTGT
LOC_Os02g02510
Os.8844.1.S1_at--748--251Chr02:894951..894975 (25 bp)
ATATCTGTGTTATCTTCTTGAGAGA
LOC_Os02g02510
Os.8844.1.S1_at--1074--6992Chr03:12514012..12514032 (21 bp)
GTACTGATTCATATAATCACTCCTT
LOC_Os03g21914
Os.8844.1.S1_at--23--3091Chr02:894725..894749 (25 bp)
AATCACTCCTTTTATCTTATGTTTG
LOC_Os02g02510
Os.8844.1.S1_at--701--3671Chr02:894699..894723 (25 bp)
CTTTCTGTTATGTATGATCTCTGGG
LOC_Os02g02510
Os.8844.1.S1_at--989--2031Chr02:894657..894681 (25 bp)
ACTATCAGTTATTCATGTGTGATTT
LOC_Os02g02510
Target Sequence 
GCGGTTCAGCCGGTACAAGAACCCGGACGCGGTGAGGCAGGTGAGGGAGACGCTGAGCCGCTACGGCCTCGCCGAGTTCG
AGCTCTGCACCCTCGGCAACCTCTGCCCCGACACCAGCGACGAGGCCTCCGCCCTCGTCCCCTCCCTCCGNTCCGGCGGC
AGGTTCGTCGGCGANCCCGGNNAGCGAGAAGATCGACAAGATGCTCAACGACCTCTCCCTTATCAAGAAGTTCGAGTAGT
AGGACTGTAGCTTATCAGATTTGCTGGTGAACTGTCTAATTAATATCTGTGTTATCTTCTTGAGAGAAGGTGAATCATAA
TTAGGGCTCATTTGATTTGAATGCTCGTTGAGGTTTGTTCGATATCAAATCGATCCAAAGTTCTGCTGTGTATCAGTGTA
TCACCTTCAGGAGGAATGTAGTGAGATCATGAAAACCGAGATTAAGTCAATATCTATCTAGNGACTTTTGAAAAGAAAAA
GGAGGTGAATTGGAGTACTGATTCATATAATCACTCCTTTTATCTTATGTTTGNCTTTCTGTTATGTATGATCTCTGGGA
GTGATGTTNCATTTTACTATCAGTTATTCATGTGTGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis