Browse Element(s) Details


Os.19594.1.A1_at

Description gb:AK064929.1
DB_XREF= gi:32974947
TID=Os.19594.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.19594 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000O03, full insert sequence.
FL= gb:AK064929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0252011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02470Os.2246.1.S1_at11/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02470OsAffx.1157.1.S1_at2/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02480Os.17893.1.S1_at11/112+875904..878615Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02490Os.56364.1.S1_x_at11/112+884324..887679Leucine Rich Repeat family protein, expressed
LOC_Os02g02500Os.49670.1.S1_at11/112+890263..894233Remorin, C-terminal region family protein, expressed
LOC_Os02g02510Os.8844.1.S1_at11/112+894656..895626RNA polymerase Rpb4 family protein, expressed
LOC_Os02g02520Os.19594.1.A1_at11/112+896074..900372expressed protein
LOC_Os02g02530Os.28063.1.S1_at11/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02530Os.7138.1.A1_x_at2/112+906668..911506signal peptide peptidase family protein, expressed
LOC_Os02g02540Os.21831.1.S1_at11/112+918797..923968Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os02g02550Os.2370.2.S1_at10/112+924473..926622peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19594.1.A1_at--1013--8251Chr02:899073..899186 (25 bp)
GGCAGCGTGACTACTCTAAGACAAT
LOC_Os02g02520
Os.19594.1.A1_at--176--3171Chr02:899184..899208 (25 bp)
AATTGCAGTCACTCCATATATCGTG
LOC_Os02g02520
Os.19594.1.A1_at--435--2131Chr02:899213..899237 (25 bp)
ACAGTGGTGCTGTATTCCGTCAATA
LOC_Os02g02520
Os.19594.1.A1_at--76--4551Chr02:899473..899497 (25 bp)
GCCCTGGCAGGTCATGCTTAAGCAA
LOC_Os02g02520
Os.19594.1.A1_at--122--3251Chr02:899495..899519 (25 bp)
CAAGCCGATGGTTCTTATGCATGTG
LOC_Os02g02520
Os.19594.1.A1_at--153--3791Chr02:899535..899555 (21 bp)
CTCGGTTCACTTTGGGACAGGCTAA
LOC_Os02g02520
Os.19594.1.A1_at--120--5471Chr02:900070..900094 (25 bp)
GAACTTGAGGTTGAGGCCCTGCTGC
LOC_Os02g02520
Os.19594.1.A1_at--718--9191Chr02:900095..900119 (25 bp)
TGCCTTGTCTGGGTGCTGATCTGAT
LOC_Os02g02520
Os.19594.1.A1_at--562--2911Chr02:900186..900210 (25 bp)
AAGGATGCAAATTGCCTGTGCTGCA
LOC_Os02g02520
Os.19594.1.A1_at--684--7892Chr11:5221803..5222209 (25 bp)
GGATTTTCCTTTCTTTTTCGATGAT
NONE
Os.19594.1.A1_at--753--10191Chr02:900299..900323 (25 bp)
TATATGTGTTGGACTCTGCTTCTTT
LOC_Os02g02520
Target Sequence 
GGCAGCGTGACTACTCTAAGACAATTGCAGTCACTCCATATATCGTGAACTACAGTGGTGCTGTATTCCGTCAATACCCA
GGGCCCTGGCAGGTCATGCTTAAGCAAGCCGATGGTTCTTATGCATGTGTTGCAGAGAGTGCAGCTCGGTTCACTTTGGG
ACAGGCTAAGGAAGAACTGTTAAGAGTTCTTGGTTTGCAAGAAGAACAAGGAAGCTCACTAGAATTTCTCAGAAGAGGAT
ACAAGAATGCTACTTGGTGGGAAGAGAATGTTGATCAGGAGAAATCGTCAGCATGGCGAACTTGAGGTTGAGGCCCTGCT
GCTGCCTTGTCTGGGTGCTGATCTGATTGGCGGCGAGTGCAGACAGGAACAGAAGAAAAAAATGGTTGTCTGAAATTGCA
GAGCCCAGGCGACAAGGATGCAAATTGCCTGTGCTGCAATTGTACATTTTGTGATTGTAACATGTTACTGTGTGANTAAN
CAGGCATTAGAGTTTTGAGAGGATTTTCCTTTCTTTTTCGATGATTATATATGTGTTGGACTCTGCTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19594.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis