Browse Element(s) Details


Os.17893.1.S1_at

Description gb:AK103434.1
DB_XREF= gi:32988643
TID=Os.17893.1
CNT=35
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.17893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-303-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129B02, full insert sequence.
FL= gb:AK060881.1 gb:AK104188.1 gb:AK103434.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0248011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02424OsAffx.24067.1.S1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02424Os.18086.1.A1_at11/112+853767..859877Zinc finger, C2H2 type family protein, expressed
LOC_Os02g02440OsAffx.24068.1.S1_at11/112+861602..862157hypothetical protein
LOC_Os02g02450Os.7996.1.S1_at11/112+862273..864882transposon protein, putative, unclassified, expressed
LOC_Os02g02460Os.53376.1.S1_at11/112+866007..869292transposon protein, putative, unclassified, expressed
LOC_Os02g02470Os.2246.1.S1_at11/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02470OsAffx.1157.1.S1_at2/112+870724..875779oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g02480Os.17893.1.S1_at11/112+875904..878615Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02490Os.56364.1.S1_x_at11/112+884324..887679Leucine Rich Repeat family protein, expressed
LOC_Os02g02500Os.49670.1.S1_at11/112+890263..894233Remorin, C-terminal region family protein, expressed
LOC_Os02g02510Os.8844.1.S1_at11/112+894656..895626RNA polymerase Rpb4 family protein, expressed
LOC_Os02g02520Os.19594.1.A1_at11/112+896074..900372expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17893.1.S1_at--195--4951Chr02:876511..876535 (25 bp)
GCATTGAGTGTTGCTCCTACAGGAT
LOC_Os02g02480
Os.17893.1.S1_at--349--10171Chr02:876431..876455 (25 bp)
TATACCACCTTATCAAGCTCTGGGC
LOC_Os02g02480
Os.17893.1.S1_at--129--1571Chr02:876279..876303 (25 bp)
AGCTATGCTGCTATTCATCCATTGG
LOC_Os02g02480
Os.17893.1.S1_at--874--371Chr02:876251..876275 (25 bp)
ATCAAAATGTGTTCGGTCTTCCTGG
LOC_Os02g02480
Os.17893.1.S1_at--174--2451Chr02:876221..876245 (25 bp)
AAAATAGTCCGCGATGCTGTCCATT
LOC_Os02g02480
Os.17893.1.S1_at--559--6711Chr02:876170..876194 (25 bp)
GTTCTGTTTTTAACTCGTCCTATTG
LOC_Os02g02480
Os.17893.1.S1_at--823--111Chr02:876129..876153 (25 bp)
ATTAATCTGGATCGTAACCCTCTTG
LOC_Os02g02480
Os.17893.1.S1_at--579--8611Chr02:876102..876126 (25 bp)
TGGTGAATGCTCCACAAACTCTCAT
LOC_Os02g02480
Os.17893.1.S1_at--259--771Chr02:876079..876103 (25 bp)
ATGTCCCTCGCATGAGTTTGTTCAA
LOC_Os02g02480
Os.17893.1.S1_at--1069--4931Chr02:876023..876047 (25 bp)
GCATTGGCTTGGCAGTACTTGTTCT
LOC_Os02g02480
Os.17893.1.S1_at--188--5171Chr02:875991..876015 (25 bp)
GCAAGAGTTTCGCATGTGAGCACAT
LOC_Os02g02480
Target Sequence 
GCATTGAGTGTTGCTCCTACAGGATTTGTTCCTCATCTCCCTCATCCAGCTGCATTCCATCCCGCTGCATTCCCTCCATT
TATACCACCTTATCAAGCTCTGGGCAACAAAAATGCTCCTACGCCCGCAGCATTCCAAGGGATGGCAATGTGGCAGTGGT
TGCCTCCAACTGCTGTGGACACAACTCAAGATCCAAAGCTTTGGCCACCAAATGCTTAATTAGGTGCAGACTAGCTATGC
TGCTATTCATCCATTGGCAGATCAAAATGTGTTCGGTCTTCCTGGAGAGTAAAATAGTCCGCGATGCTGTCCATTACGTG
GTAAACTGTTCTTTTATTGGAGTTCTGTTTTTAACTCGTCCTATTGAGGGGCGATGCCTGTAATTAATCTGGATCGTAAC
CCTCTTGCCTGGTGAATGCTCCACAAACTCTCATGTCCCTCGCATGAGTTTGTTCAAGTGTGGAAGTTGTGACTGTGCTA
TTATTTTAGCATTGGCTTGGCAGTACTTGTTCTGTTTCTAGCAAGAGTTTCGCATGTGAGCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis